Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30996
         (787 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate epimer...    33   1.2  
AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein.                33   1.2  
U77968-1|AAB47248.1|  590|Homo sapiens neuronal PAS1 protein.          30   8.2  
U51628-1|AAC51214.1|  481|Homo sapiens MOP5 protein.                   30   8.2  
BC039016-1|AAH39016.1|  590|Homo sapiens NPAS1 protein protein.        30   8.2  
AB054002-1|BAB21098.1|  590|Homo sapiens neuronal PAS domain pro...    30   8.2  

>BC117325-1|AAI17326.1| 1221|Homo sapiens dermatan sulfate
            epimerase-like protein.
          Length = 1221

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 537  VWTT*TCEVLYITLSLTTLVIKYIKFSNSAYFNQLTTAQFISYPVPILAPFSRIFELLFS 716
            +W   T   L I   L     + +KF +  +F Q TT +  ++    L+P S + ++LF+
Sbjct: 1111 LWLANTAAALRINTDLLPTSYQLVKFEDIVHFPQKTTERIFAFLGIPLSPAS-LNQILFA 1169

Query: 717  TESGTLLKLLPYE 755
            T   T L  LPYE
Sbjct: 1170 T--STNLFYLPYE 1180


>AF480435-1|AAN32895.1| 1222|Homo sapiens NCAG1 protein.
          Length = 1222

 Score = 33.1 bits (72), Expect = 1.2
 Identities = 23/73 (31%), Positives = 36/73 (49%)
 Frame = +3

Query: 537  VWTT*TCEVLYITLSLTTLVIKYIKFSNSAYFNQLTTAQFISYPVPILAPFSRIFELLFS 716
            +W   T   L I   L     + +KF +  +F Q TT +  ++    L+P S + ++LF+
Sbjct: 1112 LWLANTAAALRINTDLLPTSYQLVKFEDIVHFPQKTTERIFAFLGIPLSPAS-LNQILFA 1170

Query: 717  TESGTLLKLLPYE 755
            T   T L  LPYE
Sbjct: 1171 T--STNLFYLPYE 1181


>U77968-1|AAB47248.1|  590|Homo sapiens neuronal PAS1 protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


>U51628-1|AAC51214.1|  481|Homo sapiens MOP5 protein.
          Length = 481

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 179 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 218


>BC039016-1|AAH39016.1|  590|Homo sapiens NPAS1 protein protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


>AB054002-1|BAB21098.1|  590|Homo sapiens neuronal PAS domain
           protein 1 (NPAS1) protein.
          Length = 590

 Score = 30.3 bits (65), Expect = 8.2
 Identities = 15/40 (37%), Positives = 19/40 (47%)
 Frame = +2

Query: 161 HSLPPGH*KRLLARVHL*IFRLNLGSFIQDCNDNTMDGRD 280
           H+LPP     L    H+ +FRL+LG  I  C     D  D
Sbjct: 288 HTLPPAPLAELPLHGHMIVFRLSLGLTILACESRVSDHMD 327


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,678,901
Number of Sequences: 237096
Number of extensions: 2362590
Number of successful extensions: 3220
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3220
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9590293096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)