Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30996
         (787 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    24   1.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.3  
DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor pro...    22   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    21   9.8  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 10/18 (55%), Positives = 15/18 (83%)
 Frame = -2

Query: 456 YNTFCDFVMFTGLSSFFI 403
           YNT  DF++++ LSSF+I
Sbjct: 339 YNT--DFIIYSSLSSFYI 354


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = -3

Query: 128  VAIIASRTLSYNTKIRPSNEDTFPSHASSL 39
            + + A+ T S   K+RP   D  P H  ++
Sbjct: 1372 ITLTATTTNSLTMKVRPHPTDNAPIHGYTI 1401


>DQ151547-1|ABA39280.1|  405|Apis mellifera tyramine receptor
           protein.
          Length = 405

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -2

Query: 456 YNTFCDFVMFTGLSSFFISL 397
           YN    +V+F+ + SFF+ +
Sbjct: 192 YNMDSSYVIFSAMGSFFLPM 211


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 177  VIENVYLQEYTCKYFA*ISGVLYRIVMTI 263
            VIE++ + +Y     A +SGVL  +V+ +
Sbjct: 985  VIESIMVSDYLPLVAATLSGVLVLLVIIV 1013


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 21.4 bits (43), Expect = 9.8
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -3

Query: 704 FKNPREWR*YRHR 666
           +KN RE+R YR R
Sbjct: 283 YKNEREYRKYRER 295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,956
Number of Sequences: 438
Number of extensions: 4707
Number of successful extensions: 17
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24760908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)