Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30991
         (667 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor Crm1|...   226   3e-60
SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces ...    30   0.34 
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p...    28   1.1  
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe...    28   1.1  
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr...    28   1.4  
SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyce...    26   4.2  
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch...    26   4.2  
SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyce...    26   5.6  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    26   5.6  
SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase |S...    25   9.8  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    25   9.8  

>SPAC1805.17 |crm1|caf2, SPAC1B2.01|nuclear export receptor
            Crm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1078

 Score =  226 bits (552), Expect = 3e-60
 Identities = 111/228 (48%), Positives = 159/228 (69%), Gaps = 7/228 (3%)
 Frame = +2

Query: 2    TSEVPKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQFKLVL 181
            T ++P + DAVF CTLEMI+KDF EYPEHR  FF LL+A+N NCF A L+IP  QFKLV+
Sbjct: 817  TDKIPLVLDAVFGCTLEMISKDFSEYPEHRAAFFQLLRAINLNCFPALLNIPAPQFKLVI 876

Query: 182  DSIIWAFKHTMRNVADTGLQILYRLLLNVEE-HPQAAQSFYRTYLCDILEHVFSVVTDTS 358
            +SI+W+FKH  R++ +TGL IL  L+ N+    P  + +F++TY   +L+ +  V+TD+ 
Sbjct: 877  NSIVWSFKHVSRDIQETGLNILLELINNMASMGPDVSNAFFQTYYISLLQDILYVLTDSD 936

Query: 359  HGAGLTMHATILAHIFSLVEAGRVTVPL-GPTP-----DNVLYIQEYIANLLKTAFSHLT 520
            H +G  + + ILA +F LVE+ ++TVPL  P+      +N L++++YI NLL TAF HL 
Sbjct: 937  HKSGFKLQSLILARLFYLVESNQITVPLYDPSQFPQEMNNQLFLRQYIMNLLVTAFPHLQ 996

Query: 521  DNQIKITVQGLFNLNQDIPAFKDHLRDFLVQIREYTGEDDSDLYLEER 664
              QI+  VQ +  LNQD   FK  LRDFL+Q++E+ G D+++LYLEE+
Sbjct: 997  PIQIQEFVQTVLALNQDSIKFKLALRDFLIQLKEF-GGDNAELYLEEK 1043


>SPAC6G9.05 |pcd1||coenzyme A diphosphatase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 285

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +2

Query: 239 QILYRLLLNVEEHPQAAQSFYRTYLCDI-LEHVFSVVTDTSHGAGLTMHATILAHIFSLV 415
           Q+ +  +  ++ H  ++QS + TYL    LE + S      +G  LTM +  L+H   L+
Sbjct: 42  QVCFEAIKYIQRHYFSSQSHHVTYLHQSPLEKLVSNGVVNENG-DLTMDS--LSHQIYLL 98

Query: 416 EAGRVTVPLGPT 451
              R T+PL PT
Sbjct: 99  HKNRPTLPLKPT 110


>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1040

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -2

Query: 144  NALKQFVLTACSNKKNSVLCSGYSSKSLLIISRVHSKTASNIFGTS 7
            N +++ VL A  ++K  ++ S    K L  ISR+++K  S +FG S
Sbjct: 994  NTIEERVL-ALQDRKRELIDSALGEKGLREISRLNTKELSFLFGMS 1038


>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 15/58 (25%), Positives = 27/58 (46%)
 Frame = +2

Query: 236 LQILYRLLLNVEEHPQAAQSFYRTYLCDILEHVFSVVTDTSHGAGLTMHATILAHIFS 409
           L +L ++L+NV ++  A        LC ++E  F V  D SH    +   ++   + S
Sbjct: 493 LAVLEQVLINVAKNTPAFNLQSCFLLCSLVEQCFGVFNDFSHRFDFSFWISVAKRLIS 550


>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1275

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = -2

Query: 261 NNSRYNICK-PVSATFLIVCLNAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSV 91
           N SRY + K P+    L++       + K+N N   G L   L Q  LT  S +K+ V
Sbjct: 733 NASRYVVSKRPIPLDLLVLSPKMDDFQLKSNTNKFLGSLAGNLPQESLTTKSKRKSKV 790


>SPAC5H10.12c |||acetylglucosaminyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 371

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 44  TLEMINKDFEEYPEHRTEFF-LLLQAVNTNCFKAFLSIPP 160
           T+   N+DF+EY   R+EF+  LL AV+        SIPP
Sbjct: 219 TVYHFNEDFKEYGASRSEFYPYLLAAVSDR--GEHHSIPP 256


>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 872

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 8/21 (38%), Positives = 18/21 (85%)
 Frame = +2

Query: 593 LRDFLVQIREYTGEDDSDLYL 655
           L+D+++ I E+ GE++++L+L
Sbjct: 357 LKDYVISICEHIGEEETELFL 377


>SPAC4G8.12c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 533

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 187 HNLGI*TYNEECGRYRFTNIVPTVVKC*G 273
           H +GI T  E C     TN +PTV++  G
Sbjct: 505 HGIGIFTAKEICENNTITNELPTVLRSVG 533


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 13/50 (26%), Positives = 26/50 (52%)
 Frame = +2

Query: 398 HIFSLVEAGRVTVPLGPTPDNVLYIQEYIANLLKTAFSHLTDNQIKITVQ 547
           ++  + E    T+PL    +N L ++  + +LLK  +S   + QI+ T +
Sbjct: 52  NLVDVQEPAEETIPLEQDKENDLELELQLPDLLKALYSDDIEAQIQATAK 101


>SPBC29A10.01 |ccr1|SPBC365.17|NADPH-cytochrome p450 reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 554 FNLNQDIPAFKDHLRDFLVQIREYTGEDDSDLYLEERL 667
           F   ++   +KD L+D    I  ++ E D  +Y++ RL
Sbjct: 578 FLYKEEWQQYKDVLKDSFELITAFSREQDHKIYVQHRL 615


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 17/71 (23%), Positives = 32/71 (45%), Gaps = 1/71 (1%)
 Frame = +2

Query: 131 CFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQIL-YRLLLNVEEHPQAAQSFYRT 307
           C +A    P + + L    + W   +  + +AD GL+I+ YR+     +HP+      +T
Sbjct: 164 CAEAIYFPPSSPYTLSTGILDWVNAYDPQPIADDGLEIMAYRI---PYQHPEFWPYVNKT 220

Query: 308 YLCDILEHVFS 340
            +  + E   S
Sbjct: 221 AIRGLFEQTIS 231


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,889,432
Number of Sequences: 5004
Number of extensions: 62919
Number of successful extensions: 182
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)