Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30991
         (667 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0358 - 28677781-28677901,28678327-28678430,28678542-286786...    32   0.47 
07_01_1111 + 10279778-10280065,10280265-10280340,10280734-102819...    29   4.4  
03_04_0020 - 16504322-16504654,16504758-16504785,16504937-165049...    29   4.4  
12_02_0981 - 25027336-25027596,25028017-25028361,25028681-250288...    28   5.8  
04_04_1054 + 30437468-30437763,30438647-30438779,30439099-304391...    28   7.7  

>01_06_0358 - 28677781-28677901,28678327-28678430,28678542-28678625,
            28679221-28679265,28679523-28679594,28679721-28679759,
            28679966-28680061,28680492-28680566,28681717-28681764,
            28681888-28681971,28682141-28682341,28682394-28682561,
            28683232-28683372,28683470-28683517,28683845-28684087,
            28684184-28684297,28685134-28685163,28685361-28685951,
            28686033-28686620,28686744-28686863,28687764-28687938,
            28688397-28688562,28688653-28688755,28689227-28689319,
            28690759-28690918,28691754-28691872
          Length = 1275

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/57 (26%), Positives = 24/57 (42%)
 Frame = +2

Query: 14   PKIFDAVFECTLEMINKDFEEYPEHRTEFFLLLQAVNTNCFKAFLSIPPAQFKLVLD 184
            P + D V E    ++NK   + P+    F  L        F   L +PP Q ++ L+
Sbjct: 1156 PALVDFVMEILSRLVNKQIWKMPKLWVGFLKLAYQTQPRSFDVILQLPPPQLEIALN 1212


>07_01_1111 +
           10279778-10280065,10280265-10280340,10280734-10281944,
           10283779-10284138
          Length = 644

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = +2

Query: 107 LLQAVNTNCFKAFLSIPPAQFKLVLDSIIWAFKHTMRNVADTGLQILYRLLLNVEEHPQA 286
           + + ++ N F+  +S PP + K VL +        + + A + LQI+Y LLL   + P+ 
Sbjct: 277 ITRMISANLFRTLIS-PPRE-KKVLQAFDLEEDEAVMDPAWSHLQIVYELLLKFIQSPET 334

Query: 287 AQSFYRTYL 313
                + Y+
Sbjct: 335 DAKLAKRYI 343


>03_04_0020 -
           16504322-16504654,16504758-16504785,16504937-16504989,
           16505377-16505463,16505636-16505704,16506071-16506145,
           16507040-16507210,16507693-16507793,16508062-16508139,
           16508492-16508648,16508737-16509006,16509369-16509485,
           16510250-16510339,16510417-16510629,16510742-16510891,
           16511929-16512342
          Length = 801

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
 Frame = -2

Query: 429 TRPASTNEKM*ARMVACIVSPAPCDVSVTTLKTCSKMSQR--*VL*KLCAACGCSSTF 262
           T+P    E M  + V C      C   +  + TCSKM+ R   V+ +LC A  C + F
Sbjct: 734 TKPPERFE-MFDKAVGCCSRLTDCCCCMCFINTCSKMNDRCAIVMVQLCGALSCLACF 790


>12_02_0981 -
           25027336-25027596,25028017-25028361,25028681-25028827,
           25028906-25029970
          Length = 605

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
 Frame = +2

Query: 173 LVLDSIIWAFKHTMRNVADT---GLQILYRLLLNVEEHPQAAQSFYRTYLCDILEHVFSV 343
           L +++  W+  H +R  A+    G ++L    L + EHP+  Q+        +  HVF  
Sbjct: 174 LRVETTRWSLDHLVRWCAELQRGGARVLMLANLAIPEHPELPQAILNCGASHLGLHVFFF 233

Query: 344 VTDTSHGAGL 373
             +  H A L
Sbjct: 234 TVEAYHIAAL 243


>04_04_1054 +
           30437468-30437763,30438647-30438779,30439099-30439159,
           30439370-30439483,30439813-30439971,30440124-30440206,
           30440423-30440549,30440872-30440951,30441027-30441113,
           30441316-30441440,30441543-30441603,30441806-30441859,
           30441946-30442023,30442449-30442554,30442655-30442803,
           30442945-30443052
          Length = 606

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 15/50 (30%), Positives = 27/50 (54%)
 Frame = -2

Query: 201 NAQIMESKTNLNCAGGMLKNALKQFVLTACSNKKNSVLCSGYSSKSLLII 52
           + + +E+ TNL+  G  + NA+ + +L    +K  + L SG S+  L  I
Sbjct: 345 DVETVETSTNLHFRGARVWNAIIEDLLAKGMSKAQNALLSGCSAGGLAAI 394


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,992,068
Number of Sequences: 37544
Number of extensions: 377881
Number of successful extensions: 856
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1679486824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)