Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30988
         (557 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     31   0.82 
12_02_1069 + 25801309-25801433,25802429-25802620,25803130-258031...    29   1.9  

>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 15/53 (28%), Positives = 32/53 (60%)
 Frame = +1

Query: 175  STDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVIKD 333
            S+ R+V+  + +L+  T+  G   AAK++ + +   +E +KMV  + E+ +K+
Sbjct: 3054 SSPRNVEVEAVDLRDETFYIGETKAAKLEEKNETNTKEDDKMVLVEVESPVKN 3106



 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +1

Query: 175  STDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEAVI 327
            ST   V+    +L+  T   G    AK++ E +   EE+NKMV  + E+ +
Sbjct: 2083 STPTDVEDEEVDLQDETSYIGEFKDAKLEDEKETISEEINKMVAVEVESSV 2133


>12_02_1069 +
           25801309-25801433,25802429-25802620,25803130-25803159,
           25803426-25803500,25803599-25804373,25804549-25804614,
           25804746-25804811,25804898-25805140,25805407-25805502
          Length = 555

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = -3

Query: 183 VCTFQLHLEPPPWPALGVSLFASL 112
           V  FQ  + PPPWPA G + F  +
Sbjct: 231 VAAFQSRMMPPPWPARGKAEFGDV 254


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,519,167
Number of Sequences: 37544
Number of extensions: 224173
Number of successful extensions: 576
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 558
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1269546012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)