Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30988
         (557 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpa...    45   4e-05
AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z46787-8|CAA86746.1|  253|Caenorhabditis elegans Hypothetical pr...    28   5.2  
AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical ...    27   6.9  
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    27   6.9  
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    27   6.9  
U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chlor...    27   9.1  
AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type chlo...    27   9.1  
AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride ...    27   9.1  
AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical ...    27   9.1  

>U88173-4|AAK21386.1|  126|Caenorhabditis elegans Vacuolar h atpase
           protein 10 protein.
          Length = 126

 Score = 44.8 bits (101), Expect = 4e-05
 Identities = 21/23 (91%), Positives = 23/23 (100%)
 Frame = +3

Query: 39  MASQTQGIQQLLAAEKRAAEKVS 107
           MASQTQGIQQLLAAEKRAAEK++
Sbjct: 1   MASQTQGIQQLLAAEKRAAEKIN 23



 Score = 41.5 bits (93), Expect = 4e-04
 Identities = 22/48 (45%), Positives = 30/48 (62%)
 Frame = +1

Query: 244 VAAKIDAETKVKIEEMNKMVQTQKEAVIKDVLNLVYDIKPELHINYRL 387
           + +KI  +T+ +I  M + V   K+AVI  +L LV DIKPELH N  L
Sbjct: 69  IESKIRRDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTL 116


>AC025716-1|AAK39606.1|  788|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.11 protein.
          Length = 788

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 20/92 (21%), Positives = 46/92 (50%)
 Frame = +1

Query: 49  RPKESNSF*LLKNALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTW 228
           + K +  F   +  LRR++ +  ++K +  +  +   KM  +  + ++    + LK S+ 
Sbjct: 152 KAKLTEHFKEAETQLRRENVKLEAQKEDILNHTKNSEKMWNERLE-NITADFERLKSSSK 210

Query: 229 VPGXGVAAKIDAETKVKIEEMNKMVQTQKEAV 324
             G     K+  E ++KI+E+N+ ++   EA+
Sbjct: 211 PSGIRADQKMFQENEMKIQELNRKLKDALEAI 242


>Z46787-8|CAA86746.1|  253|Caenorhabditis elegans Hypothetical
           protein C16C10.8 protein.
          Length = 253

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 20/59 (33%), Positives = 25/59 (42%)
 Frame = +1

Query: 145 PRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAKIDAETKVKIEEMNKMVQTQKEA 321
           PR+  K  +     S +   KNL    W      A K+  E   K EE  KM + QKEA
Sbjct: 106 PRKEAKF-INFLTNSCRLRDKNLALRAWQAIAAEADKMREEAIRKQEETQKMEKAQKEA 163


>AL110485-5|CAB60375.1| 1002|Caenorhabditis elegans Hypothetical
           protein Y46G5A.6 protein.
          Length = 1002

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 26/106 (24%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
 Frame = +1

Query: 82  KNALRR--KSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNL--KPSTWVPGXGVA 249
           K+ LRR  +  R  S +    S      K +++ T+ + +   K L  K  + VPG  +A
Sbjct: 676 KSPLRRDERRRRHDSLENERRSSATASEKSRMQETEYNGEDEEKGLDDKELSTVPGSSMA 735

Query: 250 AKIDAETKVKIEEMNKMVQTQ---KEAVIK----DVLNLVYDIKPE 366
               ++T  +++   K+++TQ   K+  +K    ++L + Y++K E
Sbjct: 736 KMDKSDTCFQLDHSEKLLETQEPKKKEKLKEKERELLAVSYEVKKE 781


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 88  ALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAK-IDA 264
           A+R  +  Q  EK+   S   R +K K+     +   S +NLKP     G  + AK +D 
Sbjct: 200 AIRLHNGHQLVEKKALTSDDVREMKQKISDASHAAFQSLENLKPRLQSVGGTIEAKALDK 259

Query: 265 ETK-VKIEE 288
            T  +KI E
Sbjct: 260 LTSLIKIFE 268


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
 Frame = +1

Query: 88  ALRRKSARQGSEKRNA*SRPRRRLKMKLKSTDRSVKGSSKNLKPSTWVPGXGVAAK-IDA 264
           A+R  +  Q  EK+   S   R +K K+     +   S +NLKP     G  + AK +D 
Sbjct: 200 AIRLHNGHQLVEKKALTSDDVREMKQKISDASHAAFQSLENLKPRLQSVGGTIEAKALDK 259

Query: 265 ETK-VKIEE 288
            T  +KI E
Sbjct: 260 LTSLIKIFE 268


>U41551-5|AAK77627.2| 1050|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform a protein.
          Length = 1050

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 431 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 309
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>U41551-4|AAK77628.1| 1085|Caenorhabditis elegans Clc-type  chloride
           channel protein4, isoform b protein.
          Length = 1085

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 431 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 309
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF319615-1|AAG49525.1| 1084|Caenorhabditis elegans CLC-type
           chloride channel CLH-4b protein.
          Length = 1084

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 431 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 309
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 169 IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 209


>AF173173-1|AAF13166.1|  978|Caenorhabditis elegans CLC chloride
           channel protein protein.
          Length = 978

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 431 VRRKLCIKYNNFA*FKR*LMWSSGLMSYTRFKTSLMTASFC 309
           ++RK    YN +   +  L+W  GL+ +  +   L+ AS C
Sbjct: 97  IQRKTVSIYNIYGSDQSYLLWGCGLLGWCGYMIGLVAASAC 137


>AF040647-6|AAR30205.3|  436|Caenorhabditis elegans Hypothetical
           protein F54D12.7 protein.
          Length = 436

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 533 VGSKKTCRLHTLVTMICQINIQFIFLNKSDQIKLVRRKL 417
           + S +TC L T   +I  +    IFL  SD +K ++ KL
Sbjct: 389 LSSLETCFLKTTKPVISTLFYTIIFLQYSDTVKTLQTKL 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,784,785
Number of Sequences: 27780
Number of extensions: 187973
Number of successful extensions: 523
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 523
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1144922904
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)