Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30987
(735 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 29 0.52
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 29 0.52
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c... 27 2.8
SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|ch... 27 3.7
SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|... 27 3.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 26 6.4
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||... 26 6.4
SPBC1604.20c |tea2|klp4|kinesin-like protein Tea2|Schizosaccharo... 26 6.4
SPAP27G11.05c |vps41||vacuolar protein sorting-associated protei... 25 8.5
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 25 8.5
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 496 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 588
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 29.5 bits (63), Expect = 0.52
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 496 DRVWHRALLSKLPSYGIPEGLCKWIASFLDG 588
D V A S+LP YGI GL W A++ G
Sbjct: 72 DYVLAHAHSSELPRYGIKWGLANWTAAYATG 102
>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1142
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/19 (63%), Positives = 13/19 (68%)
Frame = -1
Query: 696 IYRMKSVGESTEPXGTPAL 640
+YR KSV ES EP G P L
Sbjct: 140 LYREKSVEESDEPSGIPIL 158
>SPCC162.01c |||RNA-binding protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 244
Score = 26.6 bits (56), Expect = 3.7
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 571 RSTCRDPRGFRKMVASTEVPYARPCRRPSRYQGSQQEPRPCSPR 440
R RD R R+ S Y+ P RR RY+ ++ R SPR
Sbjct: 37 RRNYRDERSSRRYEDSQRRDYS-PARRRDRYERHRESVREESPR 79
>SPAC3A11.06 |mvp1||sorting nexin Mvp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 664
Score = 26.6 bits (56), Expect = 3.7
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -2
Query: 614 PSTTTVMFRPSRKLA--IHLQRPSGIP*DGSFDRSALCQTLSKAFAISRLTARASPLLSK 441
PS+T PS A +H Q+P D S D +A+ + +RL+ PLLS
Sbjct: 207 PSSTVSSIAPSTLEAGNLHSQQPPKFSVDSSVDDNAITPRKPFSKIPNRLSPSTQPLLSN 266
Query: 440 A 438
+
Sbjct: 267 S 267
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 25.8 bits (54), Expect = 6.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 269 VFKFWKVSHLPRVNCTHFVFFNFLC 195
+F+FW + + VNCT V +F C
Sbjct: 681 IFQFWMSNEVTSVNCTGIV-LSFCC 704
>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
1|||Manual
Length = 113
Score = 25.8 bits (54), Expect = 6.4
Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 592 NITVVVDGDCSDTMTI*RWRST-RFGALPHAFHPVYQ*HAVY 714
+I V+ G C +++T+ +RST H F+P + HA Y
Sbjct: 67 HIPCVICGACKNSLTVEEYRSTVHCKYCNHPFNPKCKNHAGY 108
>SPBC1604.20c |tea2|klp4|kinesin-like protein
Tea2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 25.8 bits (54), Expect = 6.4
Identities = 21/73 (28%), Positives = 36/73 (49%)
Frame = -2
Query: 626 SEQSPSTTTVMFRPSRKLAIHLQRPSGIP*DGSFDRSALCQTLSKAFAISRLTARASPLL 447
+ Q S + V S + + H +R +G+F +L L+ ISRL+A A+P L
Sbjct: 351 TSQISSLSLVDLAGSERASAHHERRK----EGAFINKSL---LTLGTVISRLSAAANPSL 403
Query: 446 SKASAHL*VRYTR 408
+ S H+ R ++
Sbjct: 404 TSNSGHIPYRESK 416
>SPAP27G11.05c |vps41||vacuolar protein sorting-associated protein
Vps41|Schizosaccharomyces pombe|chr 1|||Manual
Length = 886
Score = 25.4 bits (53), Expect = 8.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 662 SVLSPTLFILYINDMLSIDGMHCY 733
S L+ +L LY+ D + ID H Y
Sbjct: 504 STLTESLAFLYLEDNMPIDAFHLY 527
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 25.4 bits (53), Expect = 8.5
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = +1
Query: 418 LTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKL 531
+ ++W E ES AL SLD + W + LS+L
Sbjct: 606 IVNKWKEGKESNLRALLASLDTILWPECRWQKVSLSEL 643
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,179
Number of Sequences: 5004
Number of extensions: 58927
Number of successful extensions: 141
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 347244562
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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