Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30987
(735 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 48 6e-06
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 47 1e-05
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 44 1e-04
03_06_0716 - 35695158-35696795,35697075-35697288,35697290-356973... 30 2.2
04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230 29 2.9
02_05_0525 + 29764176-29764518,29765351-29765679 28 6.7
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 28 6.7
04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002 28 8.8
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 48.4 bits (110), Expect = 6e-06
Identities = 27/82 (32%), Positives = 35/82 (42%)
Frame = +1
Query: 370 QYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIP 549
Q GF GR + L+Y T K + + V LD KAFD V +L L G P
Sbjct: 1021 QTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFP 1080
Query: 550 EGLCKWIASFLDGRNITVVVDG 615
E WI L V+++G
Sbjct: 1081 ENWISWIKGLLSSSKSAVLLNG 1102
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 47.2 bits (107), Expect = 1e-05
Identities = 27/82 (32%), Positives = 37/82 (45%)
Frame = +1
Query: 370 QYGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIP 549
Q GF GR + L+Y T K + L + LD AKAFD V ++L L G P
Sbjct: 6 QTGFLKGRCISENLIYATELIQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFP 65
Query: 550 EGLCKWIASFLDGRNITVVVDG 615
+ WI + L V++ G
Sbjct: 66 DNWISWIKNLLQTSKSAVLLHG 87
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/81 (28%), Positives = 39/81 (48%)
Frame = +1
Query: 373 YGFRHGRSAGDLLVYLTHRWAEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPE 552
YGF G++ D + + +SK E + + LD KAFD + H A+LS + G P
Sbjct: 422 YGFIKGKTIQDCPAWPFEYIHQCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPL 481
Query: 553 GLCKWIASFLDGRNITVVVDG 615
+W+ + V+++G
Sbjct: 482 KWIEWVQMVFSTASSAVLLNG 502
>03_06_0716 -
35695158-35696795,35697075-35697288,35697290-35697372,
35697695-35697865
Length = 701
Score = 29.9 bits (64), Expect = 2.2
Identities = 24/67 (35%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Frame = -1
Query: 723 MPSIDSMSLI-YRMK----SVGESTEPXGTPALNGHGIRTITVYNDRDVPPIQKASDPLA 559
+P S +I YR+K SV STE P L H TI + ++ V +Q +SDP++
Sbjct: 534 VPYSGSFEVIKYRLKQIYESVESSTEESDVPTLIVHERVTIRLESESYVT-LQWSSDPIS 592
Query: 558 ETLGDSV 538
+ + DSV
Sbjct: 593 DMVSDSV 599
>04_01_0612 + 8036625-8036751,8036917-8037110,8037463-8038230
Length = 362
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = -3
Query: 619 NHRLQRP*CSAHPES*RSTCRDPRGFRKMVASTEVPYARPCRRPS 485
+ R+++ +A P S C DP+ ++ V Y+ CR PS
Sbjct: 19 DQRVKKKRAAASPNSEDGYCADPKKLNALIEDIFVCYSLSCREPS 63
>02_05_0525 + 29764176-29764518,29765351-29765679
Length = 223
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/58 (32%), Positives = 30/58 (51%)
Frame = +1
Query: 433 AEALESKGEALAVSLDIAKAFDRVWHRALLSKLPSYGIPEGLCKWIASFLDGRNITVV 606
AE + +G AV+ D+ A R RA L+ G E +C+W+A L+ R + +V
Sbjct: 55 AEGVARRGYR-AVTFDMRGA-GRSTGRASLTGSTEVGDVEAVCRWVADNLNPRGVLLV 110
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 28.3 bits (60), Expect = 6.7
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +1
Query: 526 KLPSYGIPEGLCKWIASFLDGRNITVVVDGDCSD 627
KLP + +C W A +L G++ + +VD +
Sbjct: 563 KLPEADDQKSMCNWAAEYLKGKSYSKLVDASLKE 596
>04_03_0890 + 20576843-20578119,20578563-20578806,20578890-20580002
Length = 877
Score = 27.9 bits (59), Expect = 8.8
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 482 SRRPSTGSGIGHFCRSYHLTESPRVSASGSLAFWMGG 592
+RR +G G G++C H+ R AS W+ G
Sbjct: 346 ARRVGSGGGGGYYCSVEHVVTEVRALASCDGGIWLVG 382
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,166,555
Number of Sequences: 37544
Number of extensions: 408957
Number of successful extensions: 1061
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -