Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30984
         (409 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc...    26   2.6  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    26   2.6  
SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    25   3.4  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   3.4  
SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6 |Schizosacch...    25   4.5  
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe...    25   4.5  
SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    25   6.0  
SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    25   6.0  
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c...    24   7.9  

>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 372

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 14/64 (21%), Positives = 28/64 (43%)
 Frame = +2

Query: 65  VASIVPAVYNRYNEYVRPYHMRVGRRLPLDGLLDAEQRVPGHCHGFCRRNAPVHHVQCLR 244
           +   VP+++N   E++  Y   + +    + + D   +   HCH +   N  +  +   R
Sbjct: 222 IGQTVPSLWNSTLEFIEKYPETLAKNNLWEWISDDNGKKFSHCHFW--SNFEIADLDFFR 279

Query: 245 SDCY 256
           SD Y
Sbjct: 280 SDSY 283


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 27   YLTDAAK-VNGIEPSQASFLLSIIGITNTFGRIICGWVADF 146
            YL DA   +N   P +   L SII   N   RII G++  F
Sbjct: 944  YLVDAEGFMNKRNPDENKLLCSIIRTANESKRIIFGFIRTF 984


>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +3

Query: 6   GLYVPFVYLTDAAKVNGIEPSQASFLLSIIGITNTFGRIICGWVADFPWMDSLMLNNVCL 185
           GLYV F+YL    +V   +  +     + + IT     ++ GW+ D     SL    V +
Sbjct: 159 GLYVAFIYLEKGVQVL-CDQLKYGLTNTFLSITIALLFLMVGWLCDTVGKSSLFSYKVRI 217

Query: 186 VI 191
           ++
Sbjct: 218 LL 219


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 3.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +3

Query: 261 FGIAISGYISLTSIILVDLLGLEKLTNAFGLLILF 365
           F +  +GY  +  +  VDL G EKL +  G +++F
Sbjct: 819 FSVGRTGYGQVAFLKPVDLSGFEKLEDIPGKVVVF 853


>SPBC23G7.16 |ctr6||vacuolar copper transporter Ctr6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 148

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 228 TYSAYVVIAITFGIAISGY 284
           TY+AYV++AI  G A  GY
Sbjct: 116 TYNAYVILAIAIGAAF-GY 133


>SPBC16H5.11c |skb1|rmt5|type II protein arginine
           N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 645

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 288 SLTSIILVDLLGLEKLTNAFGLLIL 362
           +++S   VD++ LEK  NAF +L++
Sbjct: 366 AISSSRTVDMIALEKNPNAFSMLLM 390


>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 21/72 (29%), Positives = 33/72 (45%)
 Frame = +3

Query: 177 VCLVIATVSVGVTPLCTTYSAYVVIAITFGIAISGYISLTSIILVDLLGLEKLTNAFGLL 356
           VC V++ + V +      +    V+ +T+   I+ Y+  +   L+  L L  LTN   L 
Sbjct: 387 VCFVVSCIFVSI------FDTLTVLLLTW---INPYVINSHTGLI--LALFYLTNLIALA 435

Query: 357 ILFRGAAAHGGL 392
             FR AA H  L
Sbjct: 436 FSFRAAATHSKL 447


>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 6.0
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 7  DCTCPSCTSRTQPKLTA*NR 66
          DC+   C +RTQ K+ A NR
Sbjct: 3  DCSHKCCLNRTQKKIKAKNR 22


>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 599

 Score = 24.2 bits (50), Expect = 7.9
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +3

Query: 264 GIAISGYISLTSIILVDLLGLEKLTNAFGLLILFRGAAAHGG 389
           G+   G ISL +II+ D+  L       G+L    GAA   G
Sbjct: 195 GLGGGGIISLVNIIISDITPLRTRPMYSGILATAWGAALVAG 236


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,595,589
Number of Sequences: 5004
Number of extensions: 32028
Number of successful extensions: 107
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)