Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30984
(409 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1045 + 23528768-23528879,23528979-23530399 36 0.016
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 30 0.81
02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063 29 1.4
07_01_0464 - 3504264-3504475,3504842-3505031,3505310-3505408,350... 28 2.5
01_07_0304 - 42628086-42628104,42628828-42630263 27 4.3
07_03_1540 - 27570605-27571375,27571474-27572748,27572769-275729... 27 5.7
04_04_1619 - 34825922-34825998,34826109-34826200,34827281-348273... 27 5.7
04_04_1617 - 34815889-34816080,34816185-34816412,34816591-348168... 27 5.7
04_04_0006 - 22102663-22103705,22105659-22105671 27 5.7
03_02_0530 + 9236323-9236346,9236933-9237185,9237872-9238119,923... 27 5.7
11_06_0612 + 25507208-25507269,25507690-25508275 27 7.6
04_04_0721 - 27549212-27549646,27549739-27549962,27550074-275502... 27 7.6
>07_03_1045 + 23528768-23528879,23528979-23530399
Length = 510
Score = 35.5 bits (78), Expect = 0.016
Identities = 28/111 (25%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Frame = +3
Query: 66 SQASFLLSIIGITNTFGRIICGWVAD--FPWMDSLMLNNVCLVIATVSVGVTPLCTTYSA 239
S +LS+IG+ G + G D PW L + + +A S+G+ P+ YS+
Sbjct: 352 STGGMILSLIGLGA--GLTVVGQHPDAKIPWAIGLSIASTLAYVAFFSIGLGPITWVYSS 409
Query: 240 YV----VIAITFGIAISGYISLTSIILVDLLGLEKLTNAFGLLILFRGAAA 380
+ V A+ + ++ + +I + L L K G L+ G AA
Sbjct: 410 EIFPLQVRALGCSLGVAANRVTSGVISMTFLSLSKAITIGGSFFLYSGIAA 460
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 29.9 bits (64), Expect = 0.81
Identities = 18/30 (60%), Positives = 20/30 (66%)
Frame = -1
Query: 406 RRPAGSPPWAAAPRNRISSPNAFVSFSSPS 317
RRPA SP AAAP S+P+A VS S PS
Sbjct: 28 RRPAPSPAAAAAPAPSPSNPSA-VSDSDPS 56
>02_05_0194 - 26627119-26627487,26627606-26627856,26627937-26628063
Length = 248
Score = 29.1 bits (62), Expect = 1.4
Identities = 26/106 (24%), Positives = 50/106 (47%), Gaps = 5/106 (4%)
Frame = +3
Query: 21 FVYLTDAAKVNGIEPSQASFLLSIIGITNTFGRIIC-GWVADFPWMDSLMLNNVCLVIA- 194
F L D+ ++ A F+ +++ + G I G + + +D L + + A
Sbjct: 6 FGSLGDSFSATSVKAYVAEFIATLLFVFAGVGSAIAYGQLTNGGALDPAGLVAIAIAHAL 65
Query: 195 TVSVGVTPLCTTYSAYVVIAITFGIAISGYIS-LTSII--LVDLLG 323
+ VGV+ ++ A+TFG+A+ G+I+ LT + + LLG
Sbjct: 66 ALFVGVSVAANISGGHLNPAVTFGLAVGGHITILTGLFYWIAQLLG 111
>07_01_0464 -
3504264-3504475,3504842-3505031,3505310-3505408,
3505561-3505653,3505926-3506891,3507267-3507485,
3508038-3508247,3508371-3508630,3508956-3510737,
3510796-3511009
Length = 1414
Score = 28.3 bits (60), Expect = 2.5
Identities = 18/57 (31%), Positives = 27/57 (47%)
Frame = -1
Query: 277 EIAIPKVIAITT*ALYVVHRGVTPTETVAMTRHTLFSIKESIQGKSATHPHMIRPNV 107
E+A V + T A + HR VT TE + +R L ++ E + G A+ P V
Sbjct: 90 EVAHAAVSSCLTLARGLHHRAVTTTEGLGSSRRGLHALHERLAGFHASQCGFCTPGV 146
>01_07_0304 - 42628086-42628104,42628828-42630263
Length = 484
Score = 27.5 bits (58), Expect = 4.3
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
Frame = +3
Query: 150 WMDSLMLNNVCLVIATVSVGVTPLCTTYSA--YVVIAITFGIAIS-GYISLTS-IILVDL 317
W ++ + ++ +A S+G+ P+ YS+ + + G A+ G +TS +I +
Sbjct: 326 WAIAVSIASILAFVAFFSIGLGPITWVYSSEIFPLHLRALGCALGVGLNRVTSGVISMTF 385
Query: 318 LGLEKLTNAFGLLILFRGAAA 380
L L K G L+ G A+
Sbjct: 386 LSLSKAITIGGSFFLYAGVAS 406
>07_03_1540 -
27570605-27571375,27571474-27572748,27572769-27572921,
27572923-27573159
Length = 811
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 33 TDAAKVNGIEPSQASFLLSIIGITNTFGRI 122
TD K NG +Q +++ + + +TFGR+
Sbjct: 493 TDNIKTNGESLAQVLWMIGVRSVADTFGRV 522
>04_04_1619 -
34825922-34825998,34826109-34826200,34827281-34827399,
34827507-34827734,34827904-34828164,34828258-34828614,
34828803-34828916,34828990-34829063,34829176-34829359,
34829685-34829830,34829951-34830309,34835569-34835789
Length = 743
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 234 SAYVVIAITFGIAISGYISLTSIILVDLLGLEKLTNAFGLLILFRG 371
+AY++IAIT + T +I+ ++L + K+ N G +ILF G
Sbjct: 568 NAYIMIAITGKGFFKASVLATGLIMNNILRIGKV-NVIGDVILFLG 612
>04_04_1617 -
34815889-34816080,34816185-34816412,34816591-34816851,
34816943-34817299,34817466-34817579,34817653-34817726,
34817839-34818022,34818349-34818494,34818628-34818986,
34819912-34820132
Length = 711
Score = 27.1 bits (57), Expect = 5.7
Identities = 16/46 (34%), Positives = 27/46 (58%)
Frame = +3
Query: 234 SAYVVIAITFGIAISGYISLTSIILVDLLGLEKLTNAFGLLILFRG 371
+AY++IAIT + T +I+ ++L + K+ N G +ILF G
Sbjct: 568 NAYIMIAITGKGFFKASVLATGLIMNNILRIGKV-NVIGDVILFLG 612
>04_04_0006 - 22102663-22103705,22105659-22105671
Length = 351
Score = 27.1 bits (57), Expect = 5.7
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 240 YVVIAITFGIAISGYISLTSIILVDLLGLEKLTNAFGLLILFR 368
YV+ ITF I G +++ I +V +LGL L ++ +L +
Sbjct: 32 YVMHPITFFTNIIGVVTIVLISIVSILGLICLCHSLNFQLLIK 74
>03_02_0530 +
9236323-9236346,9236933-9237185,9237872-9238119,
9239565-9239972
Length = 310
Score = 27.1 bits (57), Expect = 5.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 203 RNRGNDQAHVVQHQGVHPG 147
R RG + HV++H+G PG
Sbjct: 281 RGRGRGEGHVLEHRGQFPG 299
>11_06_0612 + 25507208-25507269,25507690-25508275
Length = 215
Score = 26.6 bits (56), Expect = 7.6
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = -3
Query: 257 YSNHYVGTVRGAQGRYADRNRGNDQAHVVQHQGVHPGE 144
Y G RGA+G +R R D +H GV GE
Sbjct: 93 YCRRCGGRSRGAEGAEEERGRHCDDGAEEEHGGVGAGE 130
>04_04_0721 -
27549212-27549646,27549739-27549962,27550074-27550227,
27568477-27568821,27568899-27569152,27569257-27569383
Length = 512
Score = 26.6 bits (56), Expect = 7.6
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 5/101 (4%)
Frame = +3
Query: 36 DAAKVNGIEPSQASFLLSIIGITNTFGRIIC-GWVADFPWMDSLMLNNVCLVIA-TVSVG 209
D+ + I+ A F+ +++ + G I G + +D L + + A + VG
Sbjct: 11 DSFSASSIKAYVAEFIATLLFVFAGVGSAIAYGQLTKGGALDPAGLVAIAIAHAFALFVG 70
Query: 210 VTPLCTTYSAYVVIAITFGIAISGYIS-LTSII--LVDLLG 323
V+ ++ +TFG+A+ G+I+ LT I + LLG
Sbjct: 71 VSMAANISGGHLNPVVTFGLAVGGHITILTGIFYWVAQLLG 111
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,534,614
Number of Sequences: 37544
Number of extensions: 245241
Number of successful extensions: 856
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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