Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30984
         (409 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   0.58 
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   4.1  
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              21   7.1  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   7.1  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    20   9.4  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    20   9.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    20   9.4  

>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 24.2 bits (50), Expect = 0.58
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +1

Query: 10  CTCPSCTSRTQPKLTA*NRRKHRSCCL*SV*RIRSAVSYAGGSQT 144
           C   SC+ +T    T  +  + RS  +  V  +  +VSY  GS T
Sbjct: 359 CNIVSCSPQTVHPETIIDVSRRRSSLICDVYGVNESVSYERGSMT 403


>AF388659-1|AAK71995.1|  782|Apis mellifera
          1D-myo-inositol-trisphosphate 3-kinaseisoform A
          protein.
          Length = 782

 Score = 21.4 bits (43), Expect = 4.1
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = -3

Query: 80 ERCLRRFYAVNFGCVREV 27
          +RC R ++ ++ GCV  +
Sbjct: 19 QRCSRDWFRISAGCVSRI 36


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 137 RRLPLDGLLDAEQRVPGH 190
           R L L+G+L   QR+P +
Sbjct: 87  RELSLNGMLTFFQRIPAY 104


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 7.1
 Identities = 6/15 (40%), Positives = 8/15 (53%)
 Frame = +2

Query: 89  YNRYNEYVRPYHMRV 133
           YN YN   +P H  +
Sbjct: 324 YNNYNNNYKPLHYNI 338


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 10/36 (27%), Positives = 16/36 (44%)
 Frame = +3

Query: 36  DAAKVNGIEPSQASFLLSIIGITNTFGRIICGWVAD 143
           +A KVN +   ++S      G   + G +  GW  D
Sbjct: 36  NATKVNTVHEEESSLNDLFSGPEESSGGVELGWFND 71


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  GIEPSQASFLLSIIGITNTFGRI 122
           G+  S+  F+LS++G+    G +
Sbjct: 20  GMWSSKIEFILSVVGLAIGLGNL 42


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.2 bits (40), Expect = 9.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = +3

Query: 54  GIEPSQASFLLSIIGITNTFGRI 122
           G+  S+  F+LS++G+    G +
Sbjct: 73  GMWSSKIEFILSVVGLAIGLGNL 95


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,987
Number of Sequences: 438
Number of extensions: 2507
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10256061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)