Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30981
(610 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical p... 197 6e-51
U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa ... 101 3e-22
U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical pr... 93 2e-19
U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical pr... 91 8e-19
M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical pr... 71 9e-13
L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein. 29 2.6
AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock pr... 29 2.6
Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical pr... 29 3.4
U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical pr... 29 3.4
AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical ... 29 3.4
U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resist... 28 6.0
M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.ele... 28 6.0
Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z81546-11|CAB04455.2| 394|Caenorhabditis elegans Hypothetical
protein F53A2.7 protein.
Length = 394
Score = 197 bits (480), Expect = 6e-51
Identities = 96/165 (58%), Positives = 116/165 (70%)
Frame = +2
Query: 116 KGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISSSQ 295
K +FIVGAKRT FGTFGG + SAT+L +A+ ALK A V VD ++ G V++SS+
Sbjct: 4 KCVFIVGAKRTAFGTFGGKLKGLSATDLGVVASQAALKHANVGADAVDHVIFGNVVASSR 63
Query: 296 TDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVENMS 475
DGIY RH LK+G+PQ L +NRLCGSGFQ++VN+AQ I G + I +AGG ENMS
Sbjct: 64 -DGIYLSRHIGLKSGVPQNVGALTVNRLCGSGFQAVVNAAQAIKLGESNIVLAGGTENMS 122
Query: 476 QAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEKL 610
PFAVR++RFGTALG Y FED LW LSD Y L MG TAEKL
Sbjct: 123 MVPFAVRDIRFGTALGKKYEFEDMLWDSLSDPYAKLAMGQTAEKL 167
>U41105-4|AAA82397.2| 407|Caenorhabditis elegans 3-ketoacyl-coa
thiolase protein 1 protein.
Length = 407
Score = 101 bits (243), Expect = 3e-22
Identities = 60/166 (36%), Positives = 90/166 (54%)
Frame = +2
Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISS 289
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + + +GQV +
Sbjct: 20 SNKHAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEVFLGQVCQA 79
Query: 290 SQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVEN 469
+ G R AAL AG+ V +N++C SG ++I+ +AQ I TG ++ GG+E+
Sbjct: 80 NA--GQAPARQAALGAGLDLSVAVTTVNKVCSSGLKAIILAAQQIQTGHQDFAIGGGMES 137
Query: 470 MSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEK 607
MSQ PF V+ R G + + GL+D+Y + MG EK
Sbjct: 138 MSQVPFYVQ--RGEIPYGGFQVIDGIVKDGLTDAYDKVHMGNCGEK 181
>U41105-5|AAA82398.1| 390|Caenorhabditis elegans Hypothetical
protein T02G5.7 protein.
Length = 390
Score = 92.7 bits (220), Expect = 2e-19
Identities = 57/168 (33%), Positives = 88/168 (52%), Gaps = 2/168 (1%)
Frame = +2
Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQVISS 289
S K +FI+ RTP G + G F N A EL T+A A++ +GV+P +++ ++ G V+ +
Sbjct: 2 SDKKVFILSGARTPIGAYRGSFANFGAVELGTVAAKAAIERSGVAPEKIEEVIGGCVLPA 61
Query: 290 SQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGVEN 469
G R +L AG+P + +N++C S +++V +A +I G + G EN
Sbjct: 62 GL--GQNVTRQISLSAGLPVTTQAVTVNKVCSSSMKALVTAAVEIKAGYYDTILVVGTEN 119
Query: 470 MSQAPFAV--RNVRFGTALGTNYAFEDTLWAGLSDSYCGLPMGMTAEK 607
MSQ PF V + FG T+ +D GL D PMG+ AEK
Sbjct: 120 MSQVPFYVPRGEIPFGGIQMTDGISKD----GLEDIKEKGPMGLCAEK 163
>U41105-8|AAA82403.1| 460|Caenorhabditis elegans Hypothetical
protein T02G5.4 protein.
Length = 460
Score = 90.6 bits (215), Expect = 8e-19
Identities = 55/157 (35%), Positives = 86/157 (54%), Gaps = 2/157 (1%)
Frame = +2
Query: 110 SVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVD--SMVVGQVI 283
S K FIVGA RTP G+F + +A EL ++A AL+ V P+ + ++ +GQV
Sbjct: 98 SNKDAFIVGAARTPIGSFRSSLSSVTAPELASVAIKAALERGAVKPSSIQEANVFLGQVC 157
Query: 284 SSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAGGV 463
++ G + R AAL AG+ V +N+ SG ++I+ +AQ I TG +++ GG+
Sbjct: 158 HANA--GQASARQAALGAGLDLSVAVTTVNKGWSSGMKAIILAAQQIQTGHQDLAIGGGM 215
Query: 464 ENMSQAPFAVRNVRFGTALGTNYAFEDTLWAGLSDSY 574
E+MSQ PF + V + Y E T+ G+SD +
Sbjct: 216 ESMSQVPFFLARVEQSS---NKYQVEQTVQDGISDFF 249
>M77697-2|AAA27897.2| 448|Caenorhabditis elegans Hypothetical
protein B0303.3 protein.
Length = 448
Score = 70.5 bits (165), Expect = 9e-13
Identities = 48/147 (32%), Positives = 71/147 (48%), Gaps = 1/147 (0%)
Frame = +2
Query: 98 IMSASVKGIFIVGAKRTPFGTFGGVFRNTSATELQTIATVGALKEAGVSPAQVDSMVVGQ 277
+ ++ I +V A RTPF G VF++ A +LQ A +++ + Q+D ++ G
Sbjct: 18 VAKKNMPNIVLVDAVRTPFVVSGTVFKDLMAVDLQKEAIKALVEKTKLPYEQLDHIICGT 77
Query: 278 VISSSQTDGIYTPRHAALKAGIPQEKPVLGINRLCGSGFQSIVNSAQDILTGAAKISVAG 457
VI +T I R AAL AG+P + P + C S ++ + TG A +AG
Sbjct: 78 VIQECKTSNI--AREAALLAGVPDKIPAHTVTLACISSNVAMTTGMGMLATGNANAIIAG 135
Query: 458 GVENMSQAPFAV-RNVRFGTALGTNYA 535
GVE +S P RN R LG N A
Sbjct: 136 GVELLSDVPIRYNRNAR-KAMLGMNKA 161
>L36035-1|AAA28077.1| 568|Caenorhabditis elegans HSP60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +2
Query: 200 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 379
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 380 CGSGFQSIVNSAQDILTGAAKISVAGG 460
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>AC084153-6|AAK84594.1| 568|Caenorhabditis elegans Heat shock
protein protein 60 protein.
Length = 568
Score = 29.1 bits (62), Expect = 2.6
Identities = 23/87 (26%), Positives = 38/87 (43%)
Frame = +2
Query: 200 QTIATVGALKEAGVSPAQVDSMVVGQVISSSQTDGIYTPRHAALKAGIPQEKPVLGINRL 379
Q IAT+ +K AG+ P+ + V G +S D + +AGI V+
Sbjct: 465 QPIATI--VKNAGLEPSSIIDEVTGNSNTSYGYDALNGKFVDMFEAGIIDPTKVVRTALQ 522
Query: 380 CGSGFQSIVNSAQDILTGAAKISVAGG 460
SG S++ + + ++T K GG
Sbjct: 523 DASGVASLLATTECVVTEIPKEEAVGG 549
>Z81575-1|CAB04628.1| 277|Caenorhabditis elegans Hypothetical
protein R08H2.1 protein.
Length = 277
Score = 28.7 bits (61), Expect = 3.4
Identities = 28/102 (27%), Positives = 42/102 (41%), Gaps = 8/102 (7%)
Frame = +2
Query: 200 QTIATVGALKEAGVSPAQVDSMVVGQV-ISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 376
++I G+ G S A + + QV I+ D + R LKAG+P EK +
Sbjct: 7 KSIIITGSSSGIGRSAAVIFAKEGAQVTITGRSADRLEETRLQILKAGVPAEKINAVVAD 66
Query: 377 LC-GSGFQSIVNSAQ------DILTGAAKISVAGGVENMSQA 481
+C SG ++ + DIL A + G N QA
Sbjct: 67 VCEASGQDEVIRTTLAKFGKIDILVNNAGALLTDGTSNTDQA 108
>U97405-1|AAB53007.1| 327|Caenorhabditis elegans Hypothetical
protein T09B4.5a protein.
Length = 327
Score = 28.7 bits (61), Expect = 3.4
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +3
Query: 465 RTCRKRPSRSET*GSARLWAPTTPSKTPSGPDSRT 569
+T + S+S T G P TPSKTPS +R+
Sbjct: 55 KTPSRSASKSATRGRTASKTPKTPSKTPSSASARS 89
>AL117202-4|CAB55095.3| 222|Caenorhabditis elegans Hypothetical
protein Y47D3A.5 protein.
Length = 222
Score = 28.7 bits (61), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = +3
Query: 528 TTPSKTPSGPDSRTPTADSPWA 593
T P+KTP +RTPT +SP A
Sbjct: 86 TPPTKTPPHTPTRTPTTESPVA 107
>U53333-5|AAA96158.2| 1852|Caenorhabditis elegans Amanitin resistant
protein 1 protein.
Length = 1852
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 483 PSRSET*GSARLWAPTTPSKTPSGP 557
PS SE G++ ++PT+P+ +PS P
Sbjct: 1808 PSPSEQPGTSAQYSPTSPTYSPSSP 1832
>M29235-1|AAA28126.1| 1859|Caenorhabditis elegans protein ( C.elegans
RNA polymeraseII largest subunit (ama-1 IV) gene,
complete cds. ).
Length = 1859
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = +3
Query: 483 PSRSET*GSARLWAPTTPSKTPSGP 557
PS SE G++ ++PT+P+ +PS P
Sbjct: 1815 PSPSEQPGTSAQYSPTSPTYSPSSP 1839
>Z73973-2|CAA98264.1| 277|Caenorhabditis elegans Hypothetical
protein F25D1.5 protein.
Length = 277
Score = 27.5 bits (58), Expect = 7.9
Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 8/101 (7%)
Frame = +2
Query: 200 QTIATVGALKEAGVSPAQVDSMVVGQV-ISSSQTDGIYTPRHAALKAGIPQEKPVLGINR 376
+++ G+ G S A + + QV I+ D + + LKAG+P EK +
Sbjct: 7 KSVIITGSSNGIGRSAAVIFAKEGAQVTITGRNEDRLEETKQQILKAGVPAEKINAVVAD 66
Query: 377 LC-GSGFQSIVNSAQ------DILTGAAKISVAGGVENMSQ 478
+ SG I+N+ DIL A ++A G N Q
Sbjct: 67 VTEASGQDDIINTTLAKFGKIDILVNNAGANLADGTANTDQ 107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,097,199
Number of Sequences: 27780
Number of extensions: 304206
Number of successful extensions: 1028
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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