Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30980
         (713 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual         26   4.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    26   4.7  
SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyc...    26   6.1  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    26   6.1  
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   8.1  

>SPAC1A6.11 |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 239 CLFSYNYVPKILVTYCLKGMLYLT 310
           CL S NY   IL   CL   LYL+
Sbjct: 52  CLSSCNYALSILHNICLASFLYLS 75


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +3

Query: 18  FFFVSSLISYFVYLRIMEST 77
           FFF++S ++YF Y R++ S+
Sbjct: 66  FFFITSGLAYFSYFRVLFSS 85


>SPCC970.09 |sec8||exocyst complex subunit Sec8|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1088

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 550 SPFSKLRYEININSIRTNIHTFNQEFFLN 464
           +PFSK  Y+I +++     HT   EF  N
Sbjct: 375 NPFSKSLYDIGLHAETDREHTMISEFLTN 403


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/38 (28%), Positives = 21/38 (55%)
 Frame = +2

Query: 176 CMPVATNISAFIIWIKKYR*YCLFSYNYVPKILVTYCL 289
           C+    +IS FI++ +KYR  C  ++  +   L+ Y +
Sbjct: 9   CLTSTVSISNFILYNRKYRKSCALAFLTLRYTLLCYSI 46


>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +2

Query: 386 FVY*ISYRCLSNSTKKVFIYSYSSFFI 466
           F+  ISY  L  S+ K+F +++  FF+
Sbjct: 231 FLKAISYFLLDGSSSKIFYFNWLGFFV 257


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,450
Number of Sequences: 5004
Number of extensions: 49966
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)