Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30978
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 28 1.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 27 3.1
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ... 27 3.1
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 27 4.1
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch... 26 5.4
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 26 7.1
SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase |... 26 7.1
SPAC4G9.13c |vps26|pep8|retromer complex subunit Vps26|Schizosac... 26 7.1
SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe... 25 9.4
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/92 (23%), Positives = 37/92 (40%), Gaps = 3/92 (3%)
Frame = -1
Query: 420 RLYFL--H*FPTLPQGIFVKQFSFLCQYSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPH 247
RL+F+ FP L IF +F+ +S+ L S R + Y H + +
Sbjct: 20 RLFFVCSFFFPLLYSFIFATLHAFVFLFSHTLVSSQFRRLKLPYHHHHTFTIEAFFYWFF 79
Query: 246 LLLYFGFSC-PFSLVSFCHLFQASFFPWPLIF 154
+F C F + F H + ++ P+ F
Sbjct: 80 FFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFF 111
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 312 IYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFV 452
I+ Y L ++ DI + + K ++EL + S + NQ + DF+
Sbjct: 1201 IFQAYLLKEMPNDIVSQFEMLKSKQIELTVQMASYEGDLNQNLCDFL 1247
>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 589
Score = 27.1 bits (57), Expect = 3.1
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +3
Query: 579 DELNKITNPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVIPLTS 740
D L + T P ++ + ++EK+YL A+ TG + S + +IP T+
Sbjct: 58 DFLRQETIPFVDKIFDVLREKSYLEGASNMPSTGMVTEEVSRYSPTSSMIPATN 111
>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
Length = 815
Score = 26.6 bits (56), Expect = 4.1
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = -1
Query: 228 FSCPFSLVSFCHLFQASFFPWPLIFLTSCLPS 133
F+ F+ V+F + + +F W L+FL LP+
Sbjct: 722 FAQTFAFVTFNKVCTSQYFMWYLVFLPLVLPN 753
>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 716
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/51 (31%), Positives = 27/51 (52%)
Frame = +3
Query: 336 DLNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQTKDV 488
D + IAL + + V GI+ K+T +ERN+ I F +K++ D+
Sbjct: 487 DKGLKLPPAIALVQSVVVPCGITNKTTDQERNE-IEGFCSKLADRLNAADI 536
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 339 LNTDIEKKIALQKFLEVELGISAKSTIEERNQAILDFVTKISVNTQT 479
LN DI + +V+ + +++EE+N +FVT IS QT
Sbjct: 374 LNDDITQDELNSSNADVDEEVIETTSLEEKNVDNQEFVTSISNGNQT 420
>SPAC3A12.18 |zwf1|SPAC9.01|glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 500
Score = 25.8 bits (54), Expect = 7.1
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = +3
Query: 579 DELNKIT-NPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVIPLTSDQHHH 755
D L++IT N I+ D KEK + + G Y KP+ EG + + D+ H
Sbjct: 59 DFLDRITQNIKIDEEDSQAKEKLEEFKKRCSYYRGSYDKPEDFEGLNSHLCEREGDRSTH 118
Query: 756 H 758
+
Sbjct: 119 N 119
>SPAC4G9.13c |vps26|pep8|retromer complex subunit
Vps26|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 25.8 bits (54), Expect = 7.1
Identities = 13/42 (30%), Positives = 20/42 (47%)
Frame = +3
Query: 270 DSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVEL 395
D N I + NGY LT D+ KK +++ +L + L
Sbjct: 233 DGNPNRGETIPLRMFLNGYALTPTFRDVNKKFSVRYYLSLIL 274
>SPBC359.05 |abc3||ABC transporter Abc3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1465
Score = 25.4 bits (53), Expect = 9.4
Identities = 19/71 (26%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = -1
Query: 417 LYFLH*FPTLPQGIFVKQFSFLCQ--YSNQLNRSHCRFFQQEYRHSRIH*NPGLYQYPHL 244
+Y+++ F + G+ + F F+ N + + +E S NP Y Y +
Sbjct: 890 VYWMY-FKSCSIGLILLYFFFIISGIMMNVATNVWLKHWSEENGKSSSELNPSPYFYLGI 948
Query: 243 LLYFGF-SCPF 214
L+FGF SC F
Sbjct: 949 YLFFGFLSCAF 959
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,384,678
Number of Sequences: 5004
Number of extensions: 44430
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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