Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30978
         (792 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z46794-10|CAH04745.1|  417|Caenorhabditis elegans Hypothetical p...    30   1.7  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   3.8  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   3.8  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   3.8  
Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical pr...    29   5.0  

>Z46794-10|CAH04745.1|  417|Caenorhabditis elegans Hypothetical
           protein R06F6.12 protein.
          Length = 417

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 20/60 (33%), Positives = 29/60 (48%)
 Frame = +3

Query: 588 NKITNPLINTVDQTVKEKTYLVQAALNALTGFYAKPKSSEGWINDVIPLTSDQHHHHGML 767
           ++I N  I+  + + +    LVQ AL  +     K K+ +   ND  P TS  HHHH  L
Sbjct: 200 SEIANLNIDLNNLSTENVHQLVQLALPPI-----KEKAQDSAYNDQAPSTSYHHHHHEQL 254


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 249 VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 428
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 450 IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 506

Query: 429 NQAILDFVTKISVNTQTKDVAQKNL 503
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 507 HKYIEKFTTSETVNSQIRDVAQNML 531


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 249 VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 428
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 450 IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 506

Query: 429 NQAILDFVTKISVNTQTKDVAQKNL 503
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 507 HKYIEKFTTSETVNSQIRDVAQNML 531


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 18/85 (21%), Positives = 42/85 (49%)
 Frame = +3

Query: 249 VDIDIDQDSNEFLNVDILVEKIYNGYGLTDLNTDIEKKIALQKFLEVELGISAKSTIEER 428
           +D    +D  + + V +++  + NG    D N   ++    +   +  + + +++  ++ 
Sbjct: 33  IDFLESRDPKQGMYVLLMINMMING---VDRNISDDQMWTEETMWQARMRLRSEAAKDKL 89

Query: 429 NQAILDFVTKISVNTQTKDVAQKNL 503
           ++ I  F T  +VN+Q +DVAQ  L
Sbjct: 90  HKYIEKFTTSETVNSQIRDVAQNML 114


>Z99278-1|CAB16490.1|  793|Caenorhabditis elegans Hypothetical
           protein Y53C12B.1 protein.
          Length = 793

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 13/45 (28%), Positives = 27/45 (60%)
 Frame = +3

Query: 390 ELGISAKSTIEERNQAILDFVTKISVNTQTKDVAQKNLFDKLNIL 524
           ELG + +     + + +L F  K + N++T  VAQ+ L++ ++I+
Sbjct: 699 ELGSAIRRLDTRQIEILLQFTVKWNTNSRTSSVAQRVLYEIVHIV 743


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,839,594
Number of Sequences: 27780
Number of extensions: 240174
Number of successful extensions: 682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 650
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)