Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30976
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0481 + 8789890-8789949,8790325-8790441,8790532-8790601,879... 38 0.006
10_08_0613 - 19232706-19232822,19232936-19233010,19233132-192332... 34 0.095
07_03_0542 - 19256688-19256804,19257181-19257255,19257337-192574... 31 0.51
04_04_0656 - 26988766-26988830,26989311-26989371,26989514-269895... 31 0.51
04_03_0830 - 20125827-20125913,20126262-20126357,20126974-201270... 30 1.5
07_03_0740 - 21102015-21102287,21102402-21102555,21102647-211028... 29 2.0
12_01_0686 - 5855216-5858263 29 2.7
07_01_0627 + 4685077-4685155,4685978-4686336,4686761-4686862,468... 29 3.6
08_02_1577 + 27985066-27985434,27985520-27985594,27986159-279863... 28 4.7
05_03_0493 + 14691853-14692383 28 4.7
02_04_0509 - 23554609-23555241,23555371-23556318 28 6.2
07_03_0227 - 15398371-15398925 27 8.2
>03_02_0481 +
8789890-8789949,8790325-8790441,8790532-8790601,
8790688-8790836,8791520-8791621,8791692-8791892,
8792589-8792651,8792791-8793009,8793681-8793755,
8794003-8794101,8794521-8794691
Length = 441
Score = 37.9 bits (84), Expect = 0.006
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = +2
Query: 170 YDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFPDNFV 301
+DA EL+I GD + + P GW GE +G G FP +V
Sbjct: 332 FDAQADGELSISVGDYVVVRQVAPNGWSEGECKGKAGWFPSAYV 375
>10_08_0613 -
19232706-19232822,19232936-19233010,19233132-19233287,
19233412-19233549,19233571-19233771,19233985-19234086,
19234960-19235111,19235213-19235282,19235416-19235532,
19235674-19235733
Length = 395
Score = 33.9 bits (74), Expect = 0.095
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
Frame = +2
Query: 167 AYDASEADELTIRPGD--VIRDVERLPGGWWRGELRGNRGMFPDNFV 301
+Y A EL + GD V+R V GW GE RG G FP +++
Sbjct: 336 SYRAESETELNLAAGDYIVVRKVSN--NGWAEGECRGKAGWFPYDYI 380
>07_03_0542 -
19256688-19256804,19257181-19257255,19257337-19257426,
19257506-19257568,19257659-19257856,19257973-19258074,
19259276-19259424,19260136-19260205,19260460-19260582,
19261541-19261600
Length = 348
Score = 31.5 bits (68), Expect = 0.51
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 170 YDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFPDNFV 301
++ + EL++ GD + + P GW GE +G G FP +V
Sbjct: 290 FNGTTEKELSLIVGDYVVVRQIAPNGWAEGECKGVAGWFPAAYV 333
>04_04_0656 -
26988766-26988830,26989311-26989371,26989514-26989588,
26989694-26989849,26989975-26990061,26990140-26990340,
26990942-26991043,26991223-26991374,26991488-26991557,
26991646-26991765,26992708-26992761
Length = 380
Score = 31.5 bits (68), Expect = 0.51
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 167 AYDASEADELTIRPGDVIRDVERLPGGWWRGELRGNRGMFP 289
++ A EL + GD++ + GW GE +G G FP
Sbjct: 318 SFKAESESELNLSAGDIVIVRKISTNGWAEGECKGKAGWFP 358
>04_03_0830 -
20125827-20125913,20126262-20126357,20126974-20127053,
20127124-20127220,20127457-20127544,20128491-20128576,
20129358-20130530
Length = 568
Score = 29.9 bits (64), Expect = 1.5
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -2
Query: 318 CSFRRETKLSGNMPRFPRNSPRHQPPGNLSTSRITSPGLIVSSSAS 181
C+F + KL G + ++SP H PP + S+S TS SSS+S
Sbjct: 52 CAFCLQEKL-GMLVSSSKSSPFHPPPASASSSTPTSHVAAESSSSS 96
>07_03_0740 -
21102015-21102287,21102402-21102555,21102647-21102884,
21103008-21103218,21103303-21103442,21103537-21103665,
21104120-21104960
Length = 661
Score = 29.5 bits (63), Expect = 2.0
Identities = 23/46 (50%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Frame = -2
Query: 330 LVVACSFRRETK--LSG-NMPRFPRNS-PRHQPPGNLSTSRITSPG 205
L V CSFR ETK L+G M R P S P PP N + S T PG
Sbjct: 235 LSVRCSFRIETKPFLNGTTMVRLPATSAPSPAPPVNATPSAAT-PG 279
>12_01_0686 - 5855216-5858263
Length = 1015
Score = 29.1 bits (62), Expect = 2.7
Identities = 18/47 (38%), Positives = 26/47 (55%)
Frame = -2
Query: 294 LSGNMPRFPRNSPRHQPPGNLSTSRITSPGLIVSSSASDASYAKLTV 154
+SGN+P F ++S NLS SR G+I SS ++ S KL +
Sbjct: 327 ISGNLPNFSQDSSLE----NLSVSRTNFTGMIPSSISNLRSLKKLGI 369
>07_01_0627 +
4685077-4685155,4685978-4686336,4686761-4686862,
4687528-4687598,4687871-4687989,4688327-4688422,
4688527-4688636,4688734-4688814,4689124-4689224,
4689663-4689771,4689971-4690076,4690140-4690225,
4690324-4690449,4690816-4690902
Length = 543
Score = 28.7 bits (61), Expect = 3.6
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +2
Query: 257 GELRGNRGMFPDNFVSLLNEHATTRSTGVQGRCRALYSYQ 376
GE RGM+P + + HA +R +QG+ R+LY ++
Sbjct: 20 GETLQARGMYPKQYGAA--NHAFSRFYSIQGQQRSLYGFR 57
>08_02_1577 +
27985066-27985434,27985520-27985594,27986159-27986320,
27986415-27986590,27986681-27986756,27987154-27987282,
27987363-27987482,27987734-27987815,27988016-27988110,
27988427-27988491,27988604-27988802,27989426-27989620,
27989866-27989960,27990059-27990194,27990265-27990482,
27990729-27990856,27991148-27991617
Length = 929
Score = 28.3 bits (60), Expect = 4.7
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +3
Query: 27 FLVIS*SELKCAICGSMK*K 86
F+VI+ LKC ICGS+K K
Sbjct: 124 FVVINTRSLKCCICGSLKAK 143
>05_03_0493 + 14691853-14692383
Length = 176
Score = 28.3 bits (60), Expect = 4.7
Identities = 9/15 (60%), Positives = 13/15 (86%)
Frame = -1
Query: 133 ICLHCRH*TLITTSR 89
+CLHC H TL++T+R
Sbjct: 9 LCLHCHHATLVSTAR 23
>02_04_0509 - 23554609-23555241,23555371-23556318
Length = 526
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/27 (51%), Positives = 16/27 (59%)
Frame = +2
Query: 194 LTIRPGDVIRDVERLPGGWWRGELRGN 274
L +R G RDV RLP G WR + GN
Sbjct: 19 LLVRLGAARRDVVRLPPGPWRLPVVGN 45
>07_03_0227 - 15398371-15398925
Length = 184
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = +2
Query: 245 GWWRGELRGNRGMFPDNFVSLLNEHATTRS 334
GWWR ++R RG N + ++A RS
Sbjct: 143 GWWRSDIRRKRGGVEGNKDFMPGDYACARS 172
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,347,938
Number of Sequences: 37544
Number of extensions: 315760
Number of successful extensions: 984
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 964
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 984
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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