Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30973
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce...    56   6e-09
SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr 1|...    32   0.10 
SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces pombe...    29   0.55 
SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr 1...    28   1.3  
SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr ...    26   5.1  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   8.9  
SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces...    25   8.9  

>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 520

 Score = 56.0 bits (129), Expect = 6e-09
 Identities = 39/113 (34%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
 Frame = +1

Query: 151 GQLQGRIVNSPSGKA-FYSFQGIPYAKPPLGSLRFKAPQSPEP-WDGIRDATAEGNVCAQ 324
           G L G  V   +GK   + F GI YAKPP+G LR++ P + E  +D   D      +C Q
Sbjct: 2   GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61

Query: 325 ------IDPVFAKSYVGDENCLFLNVYTPSTD--GAFLPVMIWIHGGGFKWGS 459
                  + V    +  DE+CLFLN++ P+ +      PV+ +IHGG  + G+
Sbjct: 62  PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGN 114



 Score = 30.7 bits (66), Expect = 0.24
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +2

Query: 581 NAGIKDIVQAIRWVKDNIHHFGGNAGNLTIFGESAGA 691
           N G  D    + W   +I  FGGN  N+ + G SAG+
Sbjct: 164 NFGFWDQRLGLEWTYKHIESFGGNKENIAVGGISAGS 200


>SPAC1039.03 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 31.9 bits (69), Expect = 0.10
 Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 415 PVMIWIHGGGFKWGSGNT-NLYGPDFLVDRDVVVMTINYR 531
           P  +W HGGG+  G+ NT N +          VV+ ++YR
Sbjct: 101 PCFLWFHGGGWVLGNINTENSFATHMCEQAKCVVVNVDYR 140


>SPBC32F12.09 |rum1||CDK inhibitor Rum1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 230

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 217 PYAKPPLGSLRFKAPQSPEPWDGIRDATAEGNVCAQIDPV 336
           P   P  G      P+SP  + G+ DA+ EGN    ID +
Sbjct: 3   PSTPPMRGLCTPSTPESPGSFKGVIDASLEGNSSIMIDEI 42


>SPAPB1A11.02 |||esterase/lipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +2

Query: 596 DIVQAIRWVKDNIHHFGGN-AGNLTIFGESAGARAVSLLT 712
           D + + +WV  NI   G N      + G SAG   VS+L+
Sbjct: 143 DAIDSFKWVASNIEKLGANPKRGFFLGGASAGGNFVSVLS 182


>SPCC18.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 448

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = -2

Query: 616 SNCLNYIFDPSIPLGLQACSDLRTLKHHI-YN*LSSPRHLC 497
           ++CL   FD +IPL L+   D  +L+  + +  LS+P   C
Sbjct: 260 NSCLFSAFDATIPLELKTLFDFNSLQCGLMFGVLSTPYFFC 300


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = +2

Query: 293 MPRRKGTCVLKSIQSSRNPMSAMKTAC 373
           +PR  G CVL      RNP S +  +C
Sbjct: 431 LPREWGYCVLDEGHKIRNPDSEISISC 457


>SPCC645.14c |sti1||chaperone activator Sti1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 591

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +1

Query: 274 PWDGIRDATAEGNVCAQIDPVFAKSYVGDENCLFL 378
           P + IRD     N   ++DP FAK+YV     LF+
Sbjct: 449 PAECIRDC----NKAIELDPNFAKAYVRKAQALFM 479


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,513,681
Number of Sequences: 5004
Number of extensions: 82276
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 214
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)