Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30971
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2E1P3.05c |||fungal cellulose binding domain protein|Schizos...    27   2.2  
SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subuni...    26   6.8  

>SPAC2E1P3.05c |||fungal cellulose binding domain
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 197

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -1

Query: 499 GTEFVHHGPVYSKCFEPPDVD 437
           G+E +++GP YS+C  P D+D
Sbjct: 90  GSECIYNGPYYSQCI-PVDID 109


>SPBC17A3.01c |tim50|SPBC8D2.21c|TIM23 translocase complex subunit
           Tim50 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 27/91 (29%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
 Frame = -1

Query: 709 SVIRIAP*CGVMFDKS--GKIPL-STAPLRILKFFGHVSIKENSMEGLVVQGQLESKKSR 539
           + I +AP  G   DK   G IPL     +  +K    V +K    + + ++     +K R
Sbjct: 290 NAIAMAPWTGNPKDKELVGLIPLLEFIAIMDIKDVRPV-LKSYQGKNIPLEYARREEKLR 348

Query: 538 CKSSTSWNELINKGTEFVHHGPVYSKCFEPP 446
            K    WNE   KG+ F+  G   S+  EPP
Sbjct: 349 TKLIEDWNEKKKKGSSFLFGGRSVSE--EPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,057,319
Number of Sequences: 5004
Number of extensions: 64651
Number of successful extensions: 178
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 178
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)