Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30971
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0194 + 2130274-2131725                                           32   0.44 
01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942           28   7.1  

>10_01_0194 + 2130274-2131725
          Length = 483

 Score = 32.3 bits (70), Expect = 0.44
 Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
 Frame = -1

Query: 646 STAPLRILKFFGHVSIKENSMEGLVVQGQLESKKSRCKSS---TSWNELINKGTEFVHHG 476
           S APL I+ F GH S  ++ ++ + ++  L     R K      SW   +   T F+H  
Sbjct: 402 SAAPLHIIPFAGHSSALKD-LQRVTLRELLLDPSVRPKGDFNLVSWESRLPPYTSFIHFV 460

Query: 475 PVYSKCFEPPD 443
           P YS+ F P D
Sbjct: 461 PNYSQDF-PKD 470


>01_01_0332 - 2687623-2688032,2688195-2689921,2690017-2690942
          Length = 1020

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 664 SGKIPLSTAPLRILKFFGHVSIKENSMEGLVVQG 563
           +GKIP S A L  L+   H+S+  N +EGL+  G
Sbjct: 179 TGKIPASLANLSSLQ---HLSLSYNKLEGLIPPG 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,982,992
Number of Sequences: 37544
Number of extensions: 385809
Number of successful extensions: 830
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 829
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)