Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30971
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical pr...    31   0.90 
U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical pr...    28   8.4  

>Z81109-1|CAB03245.1|  485|Caenorhabditis elegans Hypothetical
           protein R10D12.1 protein.
          Length = 485

 Score = 31.1 bits (67), Expect = 0.90
 Identities = 12/33 (36%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +1

Query: 460 ISSTLDHGEQTQF-LCLLVHSSWLMICSVIFCF 555
           +S+ L HG   ++ +   VH++ L+IC+ IFC+
Sbjct: 424 VSTILQHGTTAEWRIVFFVHAAILLICNAIFCW 456


>U67949-1|AAL06028.2|  633|Caenorhabditis elegans Hypothetical
           protein F55A4.10 protein.
          Length = 633

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/60 (31%), Positives = 31/60 (51%)
 Frame = -2

Query: 189 GNFEHDFEHDLLRTDDNSI*KKYM*KLYFVSYFKLLFIYFLFDSGLCLLFSNNKIHRKNK 10
           GN  ++F  D L T  +S  KK    + F++   L+ + FL   G CL+F   K+  +N+
Sbjct: 275 GNSFNNF--DTLNTGQSS--KKRSFSMIFITAVILIVLVFLALLGFCLMFLRRKLASRNR 330


>Z77134-3|CAB00874.1| 1603|Caenorhabditis elegans Hypothetical
           protein R09H10.5 protein.
          Length = 1603

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
 Frame = +1

Query: 376 TCRSNR*VSNYFEDCPPGDMRLHLAARS----ISSTLDHGEQTQFLCLLVHSSWLMICSV 543
           TCR+N   S+    CPPG    H  AR+    I S +D   Q+  + +   +S     S+
Sbjct: 168 TCRNNGIGSSGRCSCPPGLYSAHCEARTCVTKIDSVVDFSSQSLIIAINTRTSMAYDLSM 227

Query: 544 I 546
           I
Sbjct: 228 I 228


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,969,565
Number of Sequences: 27780
Number of extensions: 364157
Number of successful extensions: 805
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)