Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30971
         (766 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex det...    23   3.1  
AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex det...    23   3.1  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    23   3.1  
AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex det...    23   3.1  
DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse tr...    23   4.1  
DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse tr...    23   4.1  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   5.4  
AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex det...    22   5.4  

>AY569703-1|AAS86656.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 577 LVVQGQLESKKSRCKSSTSWNELINKGTEFVHHGPVYSK 461
           LVV  +   K+S+ K +TS N L N+   F H    YS+
Sbjct: 185 LVVNIEKSGKESK-KYATSSNSLRNRTHGFQHTSSRYSR 222


>AY569701-1|AAS86654.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 577 LVVQGQLESKKSRCKSSTSWNELINKGTEFVHHGPVYSK 461
           LVV  +   K+S+ K +TS N L N+   F H    YS+
Sbjct: 196 LVVNIEKSGKESK-KYATSSNSLRNRTHGFQHTSSRYSR 233


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 577 LVVQGQLESKKSRCKSSTSWNELINKGTEFVHHGPVYSK 461
           LVV  +   K+S+ K +TS N L N+   F H    YS+
Sbjct: 196 LVVNIEKSGKESK-KYATSSNSLRNRTHGFQHTSSRYSR 233


>AY569699-1|AAS86652.1|  396|Apis mellifera complementary sex
           determiner protein.
          Length = 396

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 577 LVVQGQLESKKSRCKSSTSWNELINKGTEFVHHGPVYSK 461
           LVV  +   K+S+ K +TS N L N+   F H    YS+
Sbjct: 185 LVVNIEKSGKESK-KYATSSNSLRNRTHGFQHTSSRYSR 222


>DQ494419-1|ABF55370.1|  127|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 127

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 389 IVRFPIISKIVLRAICVYIWRLEAFRVHWTMVNKL 493
           I+R  +IS+     + +Y W  +   + WT   K+
Sbjct: 77  IIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKV 111


>DQ494418-1|ABF55369.1|  110|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 110

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/35 (25%), Positives = 17/35 (48%)
 Frame = +2

Query: 389 IVRFPIISKIVLRAICVYIWRLEAFRVHWTMVNKL 493
           I+R  +IS+     + +Y W  +   + WT   K+
Sbjct: 60  IIRMFLISQQKTSKLKIYKWNNQILHILWTSYKKV 94


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = -3

Query: 482 PWSSVLEMLRAARC 441
           PW++ L + RAA+C
Sbjct: 464 PWNAPLNVQRAAKC 477


>AY569720-1|AAS86673.1|  406|Apis mellifera complementary sex
           determiner protein.
          Length = 406

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 577 LVVQGQLESKKSRCKSSTSWNELINKGTEFVHHGPVYSK 461
           LVV  +    +S+ K +TS N L N+  +F H    YS+
Sbjct: 196 LVVNIKKSGNESK-KYATSSNSLRNRTHDFQHTSSRYSR 233


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,233
Number of Sequences: 438
Number of extensions: 4705
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23911269
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)