Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30970
(778 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162... 90 2e-18
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315... 89 5e-18
02_01_0561 + 4120268-4120339,4121462-4121588,4121715-4121770,412... 60 2e-09
06_03_1014 - 26902971-26903085,26903182-26903270,26904302-269043... 59 4e-09
09_04_0131 + 14917239-14918510,14918803-14918895 29 3.1
08_02_1462 + 27308792-27308924,27309711-27309778,27309854-273101... 29 4.1
01_05_0397 + 21753095-21753814 29 4.1
11_06_0679 - 26227654-26227770,26234067-26236217 29 5.4
11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861 29 5.4
09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173 29 5.4
04_04_0991 - 29969162-29969912,29970097-29970368 28 7.2
06_01_1136 + 9407282-9407663,9408075-9408227,9408336-9408539,940... 28 9.5
05_06_0097 + 25548272-25548664 28 9.5
05_04_0272 + 19624898-19625071,19625909-19626370,19626471-196269... 28 9.5
>06_03_0510 -
21615724-21615909,21615992-21616075,21616164-21616217,
21616324-21616371,21616529-21616611,21616963-21617113,
21617648-21617785,21617966-21618094,21618391-21618596,
21618734-21618845,21619145-21619204,21619331-21619429,
21619520-21619575,21620230-21620313,21621407-21621500
Length = 527
Score = 90.2 bits (214), Expect = 2e-18
Identities = 72/270 (26%), Positives = 125/270 (46%), Gaps = 11/270 (4%)
Frame = +2
Query: 2 IDGKGPIDTKSRMRVGIKAPGIIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDR--- 172
ID PI ++ + + + R E +QTGI +D + I RGQ+ +
Sbjct: 153 IDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLP 212
Query: 173 ------QTGKTALAIDTIINQQRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKR-LTDAG 331
Q + A + ++ + GED+ + ++ A+G T AQ KR + G
Sbjct: 213 HNEIAAQICRQAGLVKSLEKGKHAEGGEDDNFAI--VFAAMGVNMET-AQFFKRDFEENG 269
Query: 332 AINYTIIVSATASDAAPLQYLAPYSGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSL 508
++ + A+D + + P E+ + GKH L+I D+S A A R++S
Sbjct: 270 SMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSA 329
Query: 509 LLRRPPGREAYPGDVFYLHSRLLERAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVI 688
PGR YPG ++ + + ERA ++ + GS+T +P++ D++ P
Sbjct: 330 AREEVPGRRGYPGYMYTDLATIYERAGRIEGR--SGSITQIPILTMPNDDITHPTPDLTG 387
Query: 689 SITDGQIFLETELXYKGIRPAINVGLSVSR 778
IT+GQI+++ +L + I P INV S+SR
Sbjct: 388 YITEGQIYIDRQLHNRQIYPPINVLPSLSR 417
>01_06_0458 +
29531069-29531126,29531247-29531302,29531407-29531505,
29531989-29532048,29532285-29532396,29532459-29532694,
29533092-29533220,29533325-29533462,29534043-29534193,
29534394-29534476,29534658-29534705,29534828-29534881,
29534971-29535054,29535152-29535337
Length = 497
Score = 88.6 bits (210), Expect = 5e-18
Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 11/246 (4%)
Frame = +2
Query: 74 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQ----QRFNKGED 241
R E +QTGI +D + I RGQ+ + +A I Q +R K ++
Sbjct: 146 RTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQ-ICRQAGLVKRLEKSDN 204
Query: 242 -----EKKKLYCIYVAIGQKRSTVAQIVKR-LTDAGAINYTIIVSATASDAAPLQYLAPY 403
E + ++ A+G T AQ KR + G++ + A+D + + P
Sbjct: 205 ILESSEDENFAIVFAAMGVNMET-AQFFKRDFEENGSMERVTLFLNLANDPTIERIITPR 263
Query: 404 SGCAMGEFFR-DNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLE 580
E+ + GKH L+I D+S A A R++S PGR YPG ++ + + E
Sbjct: 264 IALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYE 323
Query: 581 RAAKMSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELXYKGIRPAINV 760
RA ++ + GS+T +P++ D++ P IT+GQI+++ +L + I P INV
Sbjct: 324 RAGRIEGRK--GSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINV 381
Query: 761 GLSVSR 778
S+SR
Sbjct: 382 LPSLSR 387
>02_01_0561 +
4120268-4120339,4121462-4121588,4121715-4121770,
4121841-4121912,4122017-4122128,4122247-4122284,
4122412-4122513,4122619-4122675,4122755-4122826,
4122992-4123093,4123210-4123405,4123988-4124094,
4124497-4124691,4124771-4124857,4124905-4124913,
4125599-4125703,4126067-4126164,4126250-4126328,
4126912-4127000,4127086-4127200
Length = 629
Score = 60.1 bits (139), Expect = 2e-09
Identities = 57/251 (22%), Positives = 114/251 (45%), Gaps = 13/251 (5%)
Frame = +2
Query: 65 IIPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDE 244
++ +++ P+ TG + +D+L P G I G GKT ++ Q +K +
Sbjct: 222 VMEKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-------QALSKYSNS 274
Query: 245 KKKLYCIYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYL 394
+ +YV G++ + +A+++ +LT + + T +V+ T++ +
Sbjct: 275 QA---VVYVGCGERGNEMAEVLMDFPQLTMTTEDGREESVMKRTTLVANTSNMPVAAREA 331
Query: 395 APYSGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRL 574
+ Y+G + E++RD G + ++ D S+ A A R++S L P YP + +
Sbjct: 332 SIYTGITIAEYYRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASF 391
Query: 575 LERAAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELXYKGIR 745
ERA K + GS+T + + GD S + + +SI L+ +L +
Sbjct: 392 YERAGKVRCLGSPKRDGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHF 451
Query: 746 PAINVGLSVSR 778
P++N +S S+
Sbjct: 452 PSVNWLISYSK 462
>06_03_1014 -
26902971-26903085,26903182-26903270,26904302-26904380,
26904488-26904585,26904848-26904952,26905031-26905117,
26905218-26905412,26905890-26905996,26906559-26906754,
26906865-26906966,26907100-26907171,26907404-26907505,
26907638-26907675,26907769-26907880,26907972-26908028,
26908122-26908177,26908283-26908409,26908856-26908910,
26908919-26909049
Length = 640
Score = 58.8 bits (136), Expect = 4e-09
Identities = 58/248 (23%), Positives = 112/248 (45%), Gaps = 13/248 (5%)
Frame = +2
Query: 74 RVSVREPMQTGIKAVDSLVPIGRGQRELIIGDRQTGKTALAIDTIINQQRFNKGEDEKKK 253
+++ P+ TG + +D+L P G I G GKT ++ Q +K + +
Sbjct: 239 KLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVIS-------QALSKYSNSEA- 290
Query: 254 LYCIYVAIGQKRSTVAQIVK---RLT-------DAGAINYTIIVSATASDAAPLQYLAPY 403
+YV G++ + +A+++ +LT + + T +V+ T++ + + Y
Sbjct: 291 --VVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIY 348
Query: 404 SGCAMGEFFRDNGKHALIIYDDLSKQAVAYRQMSLLLRRPPGREAYPGDVFYLHSRLLER 583
+G + E+FRD G + ++ D S+ A A R++S L P YP + + ER
Sbjct: 349 TGITIAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYER 408
Query: 584 AAK---MSDKMGGGSLTALPVIETQAGDVSAYIPTNVISITDGQIFLETELXYKGIRPAI 754
A K + GS+T + + GD S + + +SI L+ +L + P++
Sbjct: 409 AGKVKCLGSPDRTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSV 468
Query: 755 NVGLSVSR 778
N +S S+
Sbjct: 469 NWLISYSK 476
>09_04_0131 + 14917239-14918510,14918803-14918895
Length = 454
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 392 LAPYSGCAMGEFFRDNGKHALIIYDDLSK 478
L Y+ F RDN KHAL+ Y DL K
Sbjct: 75 LYTYNALMSSHFKRDNIKHALVFYYDLLK 103
>08_02_1462 +
27308792-27308924,27309711-27309778,27309854-27310159,
27310168-27310839
Length = 392
Score = 29.1 bits (62), Expect = 4.1
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 8/61 (13%)
Frame = +2
Query: 14 GPIDTKSRMR-VGIKAPGI-------IPRVSVREPMQTGIKAVDSLVPIGRGQRELIIGD 169
GP D + RM+ VGI + I V+EPM G + + +G G L +GD
Sbjct: 45 GPYDVRVRMKAVGICGSDVHYLREMRIAHFVVKEPMVIGHECAGVIEEVGSGVTHLAVGD 104
Query: 170 R 172
R
Sbjct: 105 R 105
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.1 bits (62), Expect = 4.1
Identities = 29/91 (31%), Positives = 40/91 (43%)
Frame = +2
Query: 260 CIYVAIGQKRSTVAQIVKRLTDAGAINYTIIVSATASDAAPLQYLAPYSGCAMGEFFRDN 439
C V I K +T A V +D ++ V+A D P+ A + AM +F D+
Sbjct: 84 CSTVVI-TKAATAAHSVFTFSDQSSMP----VAAAQDDGRPVG--AYWCSAAMSAYF-DD 135
Query: 440 GKHALIIYDDLSKQAVAYRQMSLLLRRPPGR 532
KH YD ++KQ V LR PP R
Sbjct: 136 KKH----YDQVTKQVVVAAADRCFLRTPPRR 162
>11_06_0679 - 26227654-26227770,26234067-26236217
Length = 755
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = -1
Query: 400 RSQVLQGSSIGSGGRHDDCVVDGTSISQS 314
R Q L ++G+GG D C + G QS
Sbjct: 63 RLQTLHNQTVGAGGSSDQCAIPGAREKQS 91
>11_02_0061 + 7904260-7904824,7904935-7905470,7906184-7906861
Length = 592
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = +2
Query: 50 IKAPGIIPRVSVREPMQTGIKAVDSL-VPIGRG 145
I + G++P +S+R +TG + D L P+GRG
Sbjct: 511 IHSNGVVPSLSLRHAGETGGRGGDGLATPVGRG 543
>09_04_0215 - 15716832-15717699,15717809-15717938,15718038-15718173
Length = 377
Score = 28.7 bits (61), Expect = 5.4
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 236 EDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 343
EDE + + +Y+AIG + +T+A + TD NY
Sbjct: 73 EDEDRLICSLYIAIGSRWATIAAQLPGRTDNDIKNY 108
>04_04_0991 - 29969162-29969912,29970097-29970368
Length = 340
Score = 28.3 bits (60), Expect = 7.2
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 218 QRFNKGEDEKKKLYCIYVAIGQKRSTVAQIVKRLTDAGAINY 343
+R N +DE++ + ++ A+G K ST+A + TD NY
Sbjct: 69 RRGNFSDDEERLIIRLHAALGNKWSTIATHLDGRTDNEIKNY 110
>06_01_1136 +
9407282-9407663,9408075-9408227,9408336-9408539,
9408709-9409174,9409434-9409575
Length = 448
Score = 27.9 bits (59), Expect = 9.5
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 446 VCHYHGKIHPWHNQSKEP 393
VCHY+ +HP HN+ K+P
Sbjct: 242 VCHYN--VHPIHNELKDP 257
>05_06_0097 + 25548272-25548664
Length = 130
Score = 27.9 bits (59), Expect = 9.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 587 RHAQADGSEDRTRHQDKPHGRGDDA 513
+H + D R RHQ++ HG DDA
Sbjct: 16 QHLRRDDDARRRRHQEQQHGGVDDA 40
>05_04_0272 +
19624898-19625071,19625909-19626370,19626471-19626905,
19626992-19627237,19627318-19628085,19628245-19628417,
19629337-19629440,19629525-19630127,19630210-19630214
Length = 989
Score = 27.9 bits (59), Expect = 9.5
Identities = 15/40 (37%), Positives = 20/40 (50%)
Frame = -2
Query: 132 GTRESTALIPVCIGSRTDTRGMIPGALIPTLIRDFVSIGP 13
G R S ++ V G T+ GM+ G + LIRD S P
Sbjct: 125 GFRTSHPMLLVVAGDETNGSGMVQGGRLSALIRDNSSETP 164
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,483,948
Number of Sequences: 37544
Number of extensions: 495036
Number of successful extensions: 1374
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1370
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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