Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30967
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 31 0.12
SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomy... 29 0.64
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom... 29 0.85
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 28 1.5
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo... 27 2.6
SPBC14F5.08 |med7||mediator complex subunit Med7|Schizosaccharom... 27 2.6
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 4.5
SPBC1778.02 |rap1||telomere binding protein Rap1|Schizosaccharom... 26 6.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 25 7.9
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 25 7.9
SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1 |Schizosa... 25 7.9
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo... 25 7.9
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 25 7.9
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 25 7.9
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 31.5 bits (68), Expect = 0.12
Identities = 35/121 (28%), Positives = 48/121 (39%), Gaps = 4/121 (3%)
Frame = +3
Query: 63 DTSRPALEAVNWSAGHNNGTVPVADAGLVLRMQNRISALQSE-LSRTTKRAADLEERLLN 239
+TSR L+ ++ NN P A+A L Q R + E L + L LL
Sbjct: 1050 ETSRKELDQFLRNSKVNNFD-PNAEAQRHLSYQARYRLKKQERLDEHKEEQEQLVTELLG 1108
Query: 240 RLSSPPSNPNVDRF-XXXXXXXXXXXXXXXXDRLRAAGDSTLVS--KEVIDQLGVIQKEL 410
L PPS PN + F D+ R GDST + E +LG ++L
Sbjct: 1109 YLPEPPSKPNANPFLLYQKMQWHVCRALADEDKRRLTGDSTAKATINETRAKLGKTWRQL 1168
Query: 411 D 413
D
Sbjct: 1169 D 1169
>SPAC17H9.05 |ebp2||rRNA processing protein Ebp2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 333
Score = 29.1 bits (62), Expect = 0.64
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 575 ITEELTAEKEFYSKHISSAKAEIERLREEN 664
+ ++L E FY + +SS KA +LRE N
Sbjct: 132 VEDDLARELAFYKQGVSSVKAAFAKLREAN 161
>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 772
Score = 28.7 bits (61), Expect = 0.85
Identities = 28/108 (25%), Positives = 45/108 (41%)
Frame = +3
Query: 177 LQSELSRTTKRAADLEERLLNRLSSPPSNPNVDRFXXXXXXXXXXXXXXXXDRLRAAGDS 356
L+S LS+ ++L + L+ S+ PS P++ + + D+
Sbjct: 317 LRSSLSKLLS-TSNLNNKPLSLSSTAPSMPSIGSVELGNMIPKETQPPSMRNDWKDYLDN 375
Query: 357 TLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYG 500
SKE++DQ G +QK C + + NQ L S SNYG
Sbjct: 376 N--SKEILDQFGFLQKRPSHDTPLCPE--DIKLNQKQTL-SFYESNYG 418
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 27.9 bits (59), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -3
Query: 116 VVVARGPVHGLQGGPAGVHGPHRPV 42
+VVA+GP GL+ P GV G ++ V
Sbjct: 758 LVVAKGPNKGLKSRPKGVKGKYKMV 782
>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 27.1 bits (57), Expect = 2.6
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 156 MQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVD 275
+Q+++ L +R +RA LEER+ + + NVD
Sbjct: 317 LQDKLELLTDAYNREKRRARSLEERMSKEMLTKLGESNVD 356
>SPBC14F5.08 |med7||mediator complex subunit
Med7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 376
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/40 (32%), Positives = 22/40 (55%)
Frame = +3
Query: 414 RRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINEDGE 533
++ +E +Q+K L +Q S +S N G D ++DGE
Sbjct: 175 KKEEEDIQMKEPLDSQDTGAVSASSVNEGFRADQKSKDGE 214
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 581 EELTAEKEFYSKHISSAKAEIERLREE 661
E+L +EKE K ++ +K E+E L+ E
Sbjct: 1487 EQLKSEKERTEKELADSKNELEHLQSE 1513
>SPBC1778.02 |rap1||telomere binding protein
Rap1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 693
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +3
Query: 504 DVDIINEDGELASAYEAQKGINRQLQK 584
DVD ++ED L +AY +Q G R L +
Sbjct: 251 DVDYVDEDLNLINAYLSQFGKKRSLNE 277
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +3
Query: 336 LRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTV 467
L + S + V++ G QKE+ RD C+ S+ N+ V
Sbjct: 553 LASTPSSEFTRRIVLESKGNSQKEIIASRDYCIGTASLCLNEDV 596
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/27 (37%), Positives = 19/27 (70%)
Frame = +3
Query: 396 IQKELDRRRDECVQLKSVLTNQTVNLK 476
+++ L ++R+EC +L+S +TN LK
Sbjct: 25 MEELLSKQREECKELQSKITNLRKQLK 51
>SPAC11E3.03 |pcs1||chromosome segregation protein Pcs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 222
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = +2
Query: 554 AEGHK*TITEELTAEKEFYSKHISSAKAEIERLREENEKYQKL 682
A+ + TI ++L E E K S K E+ + RE+ + Y K+
Sbjct: 88 ADADEDTIVKDLKKELENEKKANHSLKNELLKTREQIKNYSKI 130
>SPBC19G7.10c |||topoisomerase associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 744
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 147 VLRMQNRISALQSELSRTTKRAADLEERLLNRLSS--PPSNPNV 272
V +Q+R+ A SE + + +LEE+LLN +++ PPS P +
Sbjct: 150 VASLQDRLGAQPSEKVFSLQ---ELEEQLLNSMTAPKPPSQPAI 190
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +2
Query: 581 EELTAEKEFYSKHISSAKAEIERLREENEKYQKLLS 688
E L + + ++I+S + EIE+ R EN+ Q LS
Sbjct: 1014 ERLMDDLKNNGENIASLQTEIEKKRAENDDLQSKLS 1049
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 25.4 bits (53), Expect = 7.9
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 8/58 (13%)
Frame = +3
Query: 348 GDSTLVSKEVIDQLGVIQKE---LDRRRDECVQLKSVLTNQTVNL-----KSLASSNY 497
GD+ L + V +Q+G+++K LD + + L+ T+ T+NL KSL +S Y
Sbjct: 709 GDNPLTAVYVAEQVGIVEKPTLVLDIKHENEKILEWKSTDDTINLPMNPHKSLEASLY 766
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,239,891
Number of Sequences: 5004
Number of extensions: 37377
Number of successful extensions: 191
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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