Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30967
(700 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0017 + 133311-133615,133698-133824,133912-134253 32 0.38
02_05_0994 - 33369971-33370759,33370856-33370956,33371092-333710... 32 0.50
01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041 32 0.50
04_04_0517 + 25841292-25842099,25842256-25842308 31 1.2
02_04_0103 - 19768288-19768737 31 1.2
08_01_1059 - 10775143-10776063 30 1.5
08_01_0150 - 1179147-1179899,1180025-1180579 30 2.0
06_03_0089 - 16475677-16476309 30 2.0
04_04_1287 - 32390422-32391588,32392472-32392645 29 3.5
03_01_0049 + 418957-419040,419599-419796,419918-420040,420172-42... 29 3.5
02_04_0413 + 22681957-22682035,22682253-22682788 29 4.7
01_05_0513 - 22864657-22867899 29 4.7
11_06_0007 - 19171122-19172036 28 6.2
09_01_0096 - 1411349-1411435,1411546-1411719,1412564-1412602,141... 28 6.2
07_01_0862 - 7172083-7172931 28 6.2
07_01_0426 + 3239274-3239386,3239472-3239702,3242516-3242642,324... 28 6.2
03_05_0562 + 25648581-25648841,25650243-25650626 28 6.2
03_02_0723 + 10694128-10694793 28 6.2
11_06_0634 - 25685216-25685329,25685407-25685511,25685681-256857... 28 8.2
03_02_0617 - 9886496-9886888,9886984-9887310 28 8.2
03_02_0296 + 7191455-7191615,7192031-7192071,7192156-7192741,719... 28 8.2
02_01_0360 - 2594534-2594601,2594778-2594829,2594915-2595029,259... 28 8.2
02_01_0354 + 2551675-2551874,2552721-2552833,2552982-2553170,255... 28 8.2
01_06_0812 + 32161218-32161540,32161732-32161843,32162017-321621... 28 8.2
>01_01_0017 + 133311-133615,133698-133824,133912-134253
Length = 257
Score = 32.3 bits (70), Expect = 0.38
Identities = 16/35 (45%), Positives = 20/35 (57%)
Frame = +1
Query: 172 RRCRASCPGPPSAPPTWRRGCSIASPLRLPILTST 276
R C ++ PG S PT CS+ASPL +P T T
Sbjct: 105 RACPSTNPGCVSTNPTVGASCSLASPLIVPANTPT 139
>02_05_0994 -
33369971-33370759,33370856-33370956,33371092-33371093,
33373009-33373610
Length = 497
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/130 (21%), Positives = 53/130 (40%)
Frame = +3
Query: 96 WSAGHNNGTVPVADAGLVLRMQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVD 275
+ A + G +LR Q + A EL + K D E ++ ++S+P S ++
Sbjct: 322 YQADYKEGPFSFLHCWNILRDQPKWHAYLEELEKPNKPKMDDEVEVMEQMSTPNSPEDIK 381
Query: 276 RFXXXXXXXXXXXXXXXXDRLRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLT 455
R R R A + + ID+L +Q+ ++ RDE ++ + +
Sbjct: 382 R--PIGTKTAKAQRNGKGKRKRKAKVYLSDTDDEIDKLKEVQEMANKGRDELLETQRRVA 439
Query: 456 NQTVNLKSLA 485
+ + K LA
Sbjct: 440 SDNLESKKLA 449
>01_05_0178 - 18971075-18971863,18971960-18972197,18972791-18973041
Length = 425
Score = 31.9 bits (69), Expect = 0.50
Identities = 28/130 (21%), Positives = 53/130 (40%)
Frame = +3
Query: 96 WSAGHNNGTVPVADAGLVLRMQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVD 275
+ A + G +LR Q + A EL + K D E ++ ++S+P S ++
Sbjct: 250 YQADYKEGPFSFLHCWNILRDQPKWHAYLEELEKPNKPKMDDEVEVMEQMSTPNSPEDIK 309
Query: 276 RFXXXXXXXXXXXXXXXXDRLRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLT 455
R R R A + + ID+L +Q+ ++ RDE ++ + +
Sbjct: 310 R--PVGTKTAKAQRNGKGKRKRKAKVYLSDTDDEIDKLKEVQEMANKGRDELLETQRHVA 367
Query: 456 NQTVNLKSLA 485
+ + K LA
Sbjct: 368 SDNLESKKLA 377
>04_04_0517 + 25841292-25842099,25842256-25842308
Length = 286
Score = 30.7 bits (66), Expect = 1.2
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +1
Query: 142 GWCCACRTGSRRCRASCPGPPSAPPTWRRGCSIASPLRL 258
GW C C + + R R++ PP+ P RG ++ P RL
Sbjct: 202 GWSCTCSSPAARSRSAARRPPTCSPHVLRG-NLRFPPRL 239
>02_04_0103 - 19768288-19768737
Length = 149
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 154 ACRTGSRRCRASCPGPPSAPPTWRRGCSIAS 246
A R+ RCR P PP PPTW +A+
Sbjct: 50 APRSRMSRCRRREPSPPPLPPTWHAREDVAA 80
>08_01_1059 - 10775143-10776063
Length = 306
Score = 30.3 bits (65), Expect = 1.5
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 36 YGYGSVRSVDTSRPALEAVNWSAGHNNGTVPVADAGLVLRMQNRISALQSE 188
YG GS S T PA + W+ G +GT+ A A Q+ + ++++
Sbjct: 242 YGAGSSSSRATGAPASAGLRWAEGGGSGTIHSAAAAAAAGEQHTAAEVKAQ 292
>08_01_0150 - 1179147-1179899,1180025-1180579
Length = 435
Score = 29.9 bits (64), Expect = 2.0
Identities = 12/27 (44%), Positives = 14/27 (51%)
Frame = +1
Query: 178 CRASCPGPPSAPPTWRRGCSIASPLRL 258
CR S P PP P +RGC + L L
Sbjct: 398 CRCSAPSPPGQVPLSQRGCVVPKSLFL 424
>06_03_0089 - 16475677-16476309
Length = 210
Score = 29.9 bits (64), Expect = 2.0
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 172 RRCRASCPGPPSAPPTWRRGCSIASPLRLPI 264
RR R C G APP R SPL LP+
Sbjct: 143 RRLRRCCTGEHQAPPLLRPAAPALSPLGLPL 173
>04_04_1287 - 32390422-32391588,32392472-32392645
Length = 446
Score = 29.1 bits (62), Expect = 3.5
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
Frame = +3
Query: 351 DSTLVSKEVIDQLGV-IQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINED 527
D L+S + + Q I KE+ R+ DE SVL+ + LK+ + + + N
Sbjct: 47 DQQLISLQALLQKEQEISKEMRRKMDELEAKTSVLSIERTELKNKLMDSETTTTYLTNTQ 106
Query: 528 GELASAYEAQKGINRQLQKS 587
EL +A ++G Q++++
Sbjct: 107 KELEAALVEKEGHINQMKEN 126
>03_01_0049 +
418957-419040,419599-419796,419918-420040,420172-420209,
420334-420502,421115-424273,424367-424485,424915-425116
Length = 1363
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = +3
Query: 372 EVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDVDIINE-DGELASAY 548
E+ +L E D R E +LKS + T K +S YG +D+ E + ++
Sbjct: 348 ELEAELSAAHAERDSYRQEIEELKSSMKEVTTRQKVGGTSKYGDWIDLQKELEDDVKFLK 407
Query: 549 EAQKGINRQLQKS 587
E+ ++ QL+ +
Sbjct: 408 ESNANLSIQLKNT 420
>02_04_0413 + 22681957-22682035,22682253-22682788
Length = 204
Score = 28.7 bits (61), Expect = 4.7
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +1
Query: 142 GWCCACRTGSRRCRASCPGPPSAPPT 219
G CC S +C A CP PP PP+
Sbjct: 74 GGCCCGAGCSEQC-AECPRPPHPPPS 98
>01_05_0513 - 22864657-22867899
Length = 1080
Score = 28.7 bits (61), Expect = 4.7
Identities = 18/43 (41%), Positives = 22/43 (51%)
Frame = -3
Query: 167 PVLHAQHQPGVRHRHGPVVVARGPVHGLQGGPAGVHGPHRPVA 39
PV+ + P H H + GP HG PA VHGPH P+A
Sbjct: 214 PVIIVEEAPPPMH-HPMMPPMHGP-HGPMMPPA-VHGPHGPMA 253
>11_06_0007 - 19171122-19172036
Length = 304
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = +3
Query: 165 RISALQSELSRTTKRAADLEERL 233
R+ +S+L+ +RAADLEERL
Sbjct: 143 RLQETESQLAAARRRAADLEERL 165
>09_01_0096 -
1411349-1411435,1411546-1411719,1412564-1412602,
1414316-1414530,1415616-1415769,1416836-1417015
Length = 282
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = +3
Query: 351 DSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNY 497
++T++ K V Q QKE D R E QLK ++ ++SL +NY
Sbjct: 211 ENTILKKAVAIQ-HERQKEHDGRNQEIQQLKQLVAQYQEQIRSLEVNNY 258
>07_01_0862 - 7172083-7172931
Length = 282
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/30 (50%), Positives = 15/30 (50%)
Frame = +1
Query: 127 RWRTPGWCCACRTGSRRCRASCPGPPSAPP 216
R R PG A SRRC A P PP PP
Sbjct: 107 RLRGPG--AALNLPSRRCVAPAPPPPPPPP 134
>07_01_0426 +
3239274-3239386,3239472-3239702,3242516-3242642,
3242729-3242788,3242868-3242960,3243073-3243369,
3243450-3243761,3243857-3244114,3244227-3244375,
3244470-3245102,3245367-3245640,3245736-3245777,
3246332-3246586,3246700-3246711
Length = 951
Score = 28.3 bits (60), Expect = 6.2
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -3
Query: 536 QFTVFVNDVHVRPVIG*GERLQIHRLIRQYALQLDAFVAAPVQLLLYDAQLIDNLLGD 363
Q + VND+ V G R H LI L F+ + +Q L + ++L+D LGD
Sbjct: 236 QSSADVNDMDVDLSYGSFGRSSSHGLIGLENLGNTCFMNSSIQCLAHTSKLVDYFLGD 293
>03_05_0562 + 25648581-25648841,25650243-25650626
Length = 214
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/23 (47%), Positives = 12/23 (52%)
Frame = +1
Query: 148 CCACRTGSRRCRASCPGPPSAPP 216
C AC+ RRC A C P PP
Sbjct: 42 CAACKLLRRRCAAGCVFAPYFPP 64
>03_02_0723 + 10694128-10694793
Length = 221
Score = 28.3 bits (60), Expect = 6.2
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 81 GRACWCPRTAPTRSRSHPRLRSPA 10
GR WCP TR R+H LR A
Sbjct: 170 GRERWCPELLVTRPRTHRLLRCSA 193
>11_06_0634 - 25685216-25685329,25685407-25685511,25685681-25685740,
25685827-25685965,25686056-25686240,25686328-25686411,
25686499-25686621,25687088-25687267,25687364-25687433,
25687520-25687616,25687695-25687770,25688259-25688348,
25688383-25688529,25688647-25688715,25689004-25689177,
25689266-25689336,25689409-25689557,25690723-25690774,
25690865-25691120,25691196-25691287,25691420-25691541,
25691909-25692679,25692883-25692940,25693068-25693107,
25694462-25694595,25694685-25694793,25694896-25694991
Length = 1220
Score = 27.9 bits (59), Expect = 8.2
Identities = 29/138 (21%), Positives = 55/138 (39%), Gaps = 1/138 (0%)
Frame = +3
Query: 150 LRMQNRISALQSELSRTTKRAADLEERLLNRLSSPPSNPNVDRFXXXXXXXXXXXXXXXX 329
L+ ++ + ++++ LSR +DLEE + S +N NVD+
Sbjct: 799 LKAKSNVGSIRTFLSRNGIECSDLEELFIKDQSL--TNENVDKIVGYAVSYHLKHNKV-- 854
Query: 330 DRLRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDV 509
+ G L S+ + L ++Q + LK V+T + LA +D+
Sbjct: 855 -EISKDGKLVLASESLKHGLNMLQNMQSDNKSSKKSLKDVVTENEFEKRLLADVIPPNDI 913
Query: 510 DIINED-GELASAYEAQK 560
+ +D G L + + K
Sbjct: 914 GVTFDDIGALENVKDTLK 931
>03_02_0617 - 9886496-9886888,9886984-9887310
Length = 239
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 148 CCACRTGSRRCRASCPGPPSAPPT 219
C AC+ RRC C P PPT
Sbjct: 64 CAACKVLRRRCADGCVLAPYFPPT 87
>03_02_0296 +
7191455-7191615,7192031-7192071,7192156-7192741,
7193307-7193444,7193572-7193728,7193848-7194332,
7194867-7195086
Length = 595
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/32 (46%), Positives = 17/32 (53%)
Frame = -1
Query: 649 SLYFGLSGRYVLRIEFLFGCQLFCNCLFMPFC 554
S Y L G +R L GC LFC LF+ FC
Sbjct: 351 SFYCQLEGTNWVRNLLLTGC-LFCGPLFLTFC 381
>02_01_0360 -
2594534-2594601,2594778-2594829,2594915-2595029,
2595124-2595212,2595326-2595391,2595468-2595657,
2595811-2596037,2596111-2596185,2596283-2596354,
2596507-2596577,2596848-2597036,2597186-2597298,
2598063-2598268
Length = 510
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -3
Query: 500 PVIG*GERLQIHRLIRQYALQLDAFVAAPVQLLLYDAQLIDNLLGDESTVSGSA 339
P + GERL + + + AL A +AAP+ +L A ++ + ++ S SA
Sbjct: 5 PAVVSGERLVVFLFVARVALAAPAQLAAPLAVLAAAALAVELAVDASASASASA 58
>02_01_0354 +
2551675-2551874,2552721-2552833,2552982-2553170,
2553667-2553737,2553835-2553909,2553983-2554209,
2554361-2554550,2554627-2554692,2554807-2554895,
2554990-2555104,2555190-2555241,2555317-2555417,
2555516-2555629
Length = 533
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = -3
Query: 500 PVIG*GERLQIHRLIRQYALQLDAFVAAPVQLLLYDAQLIDNLLGDESTVSGSAEPV 330
P + GERL + + + AL A +AAP+ +L A ++ L + + S S+ P+
Sbjct: 7 PAVVSGERLVVFLFVARVALAAPAQLAAPLAVLAAAALAVE--LAVDGSASASSSPL 61
>01_06_0812 +
32161218-32161540,32161732-32161843,32162017-32162176,
32162589-32162737,32162832-32162983,32163744-32163858,
32163956-32164093
Length = 382
Score = 27.9 bits (59), Expect = 8.2
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +3
Query: 399 QKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGSDV 509
Q+E D C+ +K+ + +++LKSL +++GSDV
Sbjct: 87 QEEEDEGLARCIPVKAYFLSTSIDLKSL-QADHGSDV 122
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,534,296
Number of Sequences: 37544
Number of extensions: 317550
Number of successful extensions: 1708
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1705
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -