Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30967
         (700 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.9  
EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.    21   8.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   8.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   8.5  
AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.    21   8.5  

>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 484  PHPITGLTWTSLTKTVNWRRP 546
            PH  T  T TS T  ++W  P
Sbjct: 1085 PHDTTCTTLTSQTIRISWMSP 1105



 Score = 21.4 bits (43), Expect = 8.5
 Identities = 15/56 (26%), Positives = 21/56 (37%)
 Frame = +3

Query: 336  LRAAGDSTLVSKEVIDQLGVIQKELDRRRDECVQLKSVLTNQTVNLKSLASSNYGS 503
            LR  G  +     V  Q GV    LD+RR +       +      L  +  SNY +
Sbjct: 1608 LRGKGHGSDKDDVVYQQTGVGGATLDKRRPDLRDELGYIAPPNRKLPPVPGSNYNT 1663


>EF032397-1|ABM97933.1|  200|Apis mellifera arginine kinase protein.
          Length = 200

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 363 VSKEVIDQLGVIQKELDRRRDECVQ 437
           +SK+V DQL   +   D    +C+Q
Sbjct: 14  LSKDVFDQLKTKKTSFDSTLLDCIQ 38


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 149 VAHAEQDLGAAERAV 193
           VAH E+DLG+  + +
Sbjct: 583 VAHREEDLGSESKTI 597


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = +2

Query: 149 VAHAEQDLGAAERAV 193
           VAH E+DLG+  + +
Sbjct: 551 VAHREEDLGSESKTI 565


>AF023619-1|AAC39040.1|  355|Apis mellifera arginine kinase protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 363 VSKEVIDQLGVIQKELDRRRDECVQ 437
           +SK+V DQL   +   D    +C+Q
Sbjct: 30  LSKDVFDQLKTKKTSFDSTLLDCIQ 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,034
Number of Sequences: 438
Number of extensions: 2802
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)