Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30966
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    27   2.4  
SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|c...    27   2.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    27   3.1  
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    26   7.2  

>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/31 (45%), Positives = 21/31 (67%)
 Frame = +2

Query: 377 SPQVSNSNMYCRSF*ILEKSKTSYTLSNNLF 469
           S +VS+S+ Y RSF  +EK+ T   +S+N F
Sbjct: 332 SNKVSSSDFYTRSFEEIEKTFTFVEISDNEF 362


>SPAC30.03c |tsn1|tsn, mug90|translin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 236

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = -1

Query: 764 PIKTKINDFELKIKQLVFVMIPMCSRILLRYVKYIIFPGFHI 639
           P+  + + F L I+Q +  ++ +CS +  + V  +I   +HI
Sbjct: 143 PVFPEESTFHLSIEQYLHAVLSLCSELARQSVNSVISGNYHI 184


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 14/40 (35%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 347  RGRCACLMY*S-PQVSNSNMYCRSF*ILEKSKTSYTLSNN 463
            R +  C+M+ S   +S+SN+      +LEK+K  +TL+ N
Sbjct: 1307 RAKVKCIMFGSLSTLSSSNIVSHLLKLLEKNKWIFTLNEN 1346


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 56  KSLLCSSHNDNRRLYFNL 3
           +SLLCS HN  RRL+ ++
Sbjct: 95  QSLLCSEHNVPRRLHLSI 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,446
Number of Sequences: 5004
Number of extensions: 59470
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)