Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30963
         (749 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces p...    27   2.9  
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ...    27   3.8  
SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 comple...    27   3.8  

>SPCC777.05 |gtr2||Gtr1/RagA G protein Gtr2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 314

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 315 VINTSKQIIIFIRRM*RYVTIYCI*NNHNY 226
           VI  S  +++F+R M +Y+ + CI    N+
Sbjct: 260 VIRLSNDLVLFLREMNQYLALICIVRADNF 289


>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 384

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 181 HYSPVPIKLCTTYCLSVIEHFMPILNNNY-AEQRDRHKT 68
           H  P  I+ C + C  V  +FMP++ + Y ++  + H+T
Sbjct: 147 HADPRIIEECGSCCTLVCRYFMPVIRSLYDSKVSELHQT 185


>SPBC1105.07c |||nuclear pore associated protein Thp1-Sac3 complex
           subunit |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 442

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -2

Query: 175 SPVPIKLCTTYCLSVIEHFMPILNNNYAEQRDRH 74
           S + +K   ++  SVIE  MPI  N++AE+   H
Sbjct: 406 STLVLKKDPSFGFSVIESLMPIARNDHAEKEFFH 439


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,668,087
Number of Sequences: 5004
Number of extensions: 49736
Number of successful extensions: 112
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 112
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)