Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30963
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0020 + 15142402-15143421                                         31   0.98 
03_05_0923 + 28848925-28849272,28849636-28849869,28849965-288501...    28   6.9  
02_03_0161 + 15828887-15828985,15829066-15829686,15829759-158299...    28   6.9  

>01_04_0020 + 15142402-15143421
          Length = 339

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 15/30 (50%), Positives = 19/30 (63%)
 Frame = -1

Query: 251 TVSKTIIITFLCRN*IVYLLLELTLFPCSD 162
           T + TI++  LCR  + Y LLELTL   SD
Sbjct: 28  TSTPTILLLILCRPAMAYRLLELTLVSASD 57


>03_05_0923 +
           28848925-28849272,28849636-28849869,28849965-28850131,
           28850433-28850651,28850743-28850929,28851012-28851063,
           28851158-28851387,28851619-28851717,28851835-28852565,
           28853004-28853519,28854140-28854398
          Length = 1013

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 538 IENVFGNGILIIFIHLMRIFQ*GIILISIHWTKHSN 645
           I N+ GN I I    L +  + G I + +H   HSN
Sbjct: 503 ITNLVGNSIKITIFTLSQFTERGHIFVQVHLADHSN 538


>02_03_0161 +
           15828887-15828985,15829066-15829686,15829759-15829908,
           15829994-15830389,15830455-15830487,15830553-15830693,
           15830793-15830924,15830999-15831082,15831159-15831461,
           15831543-15831734,15831805-15831942,15832019-15832143,
           15832223-15832319
          Length = 836

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 657 QRRLVTMLCPVNRY*NYSSLKDSHKMYKYN*YAITKY 547
           ++ L T +  + +Y  Y+  +D HK YK+N   ITK+
Sbjct: 757 EKTLTTTIKGIEKYLRYAK-QDEHKTYKWNSTNITKW 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,818
Number of Sequences: 37544
Number of extensions: 246382
Number of successful extensions: 348
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 346
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 348
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)