Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30963
         (749 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical pr...    30   2.0  
U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chai...    29   4.7  

>Z68104-2|CAA92113.1|  359|Caenorhabditis elegans Hypothetical
           protein F08B12.2 protein.
          Length = 359

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = +1

Query: 256 SYVSLHSSYEYYYLFTCIDYTVNNYYLRKADRRFTKAVY 372
           +++S+H +++ YY+    D  + N+YLR     FT+  Y
Sbjct: 56  TFLSVHRNFDEYYII--FDLILQNHYLRNYGASFTENFY 92


>U53340-2|AAA96207.1|  142|Caenorhabditis elegans Ap-2 small chain
           (clathrin associatedcomplex) protein 2 protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 268 LHSSYEYYYLFTCIDYTVNNYYLRKADRRFTKAVYLFIYLHNLFDL 405
           ++  Y   Y   C+D T NN Y  +A   F +   L  Y HN+ +L
Sbjct: 58  VYRRYAGLYFCICVDITDNNLYYLEAIHNFVEV--LNEYFHNVCEL 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,440,847
Number of Sequences: 27780
Number of extensions: 269558
Number of successful extensions: 518
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 504
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)