Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30963
         (749 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex det...    25   0.76 
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    25   0.76 
AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex det...    24   1.3  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   2.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   5.3  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    22   7.1  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   9.3  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   9.3  

>DQ325083-1|ABD14097.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = -2

Query: 313 NQYK*TNNNIHKKNVTIRNYILYLKQ 236
           N+Y   NNN +KK +  +NYI+ ++Q
Sbjct: 102 NKYNYNNNNYNKK-LYYKNYIINIEQ 126


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 25.0 bits (52), Expect = 0.76
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 331 NNCSRCNQYK*TNNNIHKKNVTIRNYILYLKQ 236
           +N +  N Y   N N + K +  +NYI+ ++Q
Sbjct: 325 SNYNNYNNYNNNNYNNYNKKLYYKNYIINIEQ 356


>AY569697-1|AAS86650.1|  413|Apis mellifera complementary sex
           determiner protein.
          Length = 413

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 334 NNNCSRCNQYK*TNNNIHKKNVTIRNYILYLKQ 236
           NN     N YK   NN +KK +  +NYI+ ++Q
Sbjct: 320 NNYNYNNNNYKYNYNNYNKK-LYYKNYIINIEQ 351


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = -2

Query: 334 NNNCSRCNQYK*TNNNIHKKNVTIRNYI 251
           NNN +  N Y    NN +KK     NYI
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLYYNINYI 358


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 654 RRLVTMLCPVNRY*NYSSLKDSHKMYKYN 568
           R L  +LC V    NY+ L+D ++   Y+
Sbjct: 103 RSLEKLLCNVEAEENYNLLEDIYETLSYD 131


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/28 (42%), Positives = 13/28 (46%)
 Frame = -2

Query: 334 NNNCSRCNQYK*TNNNIHKKNVTIRNYI 251
           N N S  N Y    NN +KK     NYI
Sbjct: 88  NYNYSNYNNYNNNYNNYNKKLYYNINYI 115


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = -2

Query: 139 LSVIEHFMPILNN 101
           + +IEH+MP+L N
Sbjct: 496 IELIEHWMPLLPN 508


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -2

Query: 136 SVIEHFMPILNNNYAEQRDRHKTNPLNS 53
           S+ E F P  N    +Q   ++T PL+S
Sbjct: 370 SLNEDFYPTFNQTNVDQYLYNQTGPLSS 397


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,645
Number of Sequences: 438
Number of extensions: 4103
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)