Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30960
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom...   147   7e-37
SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyce...    29   0.30 
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    27   1.6  
SPBC1539.09c |trp1||anthranilate synthase component II|Schizosac...    26   2.8  
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    25   3.7  
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy...    24   8.5  
SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1 ...    24   8.5  
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po...    24   8.5  

>SPAC6G10.08 |idp1||isocitrate dehydrogenase
           Idp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 418

 Score =  147 bits (356), Expect = 7e-37
 Identities = 63/102 (61%), Positives = 83/102 (81%)
 Frame = +2

Query: 113 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSA 292
           +++    PVVEMDGDEMTR++W  I+E+L+ PY+ +   Y+DLG+  RD T+DQ+T+D+A
Sbjct: 12  QKITVKNPVVEMDGDEMTRVIWKIIREKLVLPYMDIKLDYYDLGIEARDKTNDQITVDAA 71

Query: 293 HAILKHNVGIKCATITPDEQRVEELKLKKMWLSPNGTIRNII 418
            AILK++VGIKCATITPDE RV+E  LKKMW SPNGTIRNI+
Sbjct: 72  KAILKNDVGIKCATITPDEARVKEYNLKKMWKSPNGTIRNIL 113


>SPAC688.04c |gst3||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 242

 Score = 29.1 bits (62), Expect = 0.30
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +2

Query: 266 DDQVTIDSAHAILKHNVGIKCATITPDEQRVEELKLKKMWL 388
           DD VT   + AIL+H V     +  P E+ V EL+  ++W+
Sbjct: 56  DDGVTYIESAAILEHLVRKYGPSFKPSEEDVAELEKYELWM 96


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -2

Query: 420 PIMLRIVPFGLSHIFFNFNSSTLCSSGVIVAHLMPTLCFRM 298
           P+ L ++  GLSH F N  + TL S    VA+ + +L  R+
Sbjct: 223 PVFLNLIYNGLSHFFQNILAFTLLSIISPVAYSIASLIKRI 263


>SPBC1539.09c |trp1||anthranilate synthase component
           II|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 759

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +2

Query: 29  RNMANTSTTKILKCVNQFASLTRNYGTAKRVVAAKPVVEMDGDEMTRIMWAKIKERL 199
           R + N S+++I         L +  GT + ++AAK +VE  GD +  I   K K ++
Sbjct: 516 RELLNLSSSEISNGKKTSTPLVKVCGT-RSLLAAKTIVESGGDLIGLIFVEKSKRKV 571


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 3.7
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = -2

Query: 210 YGNISLSLILAHMMRVISSPS 148
           YGNI+L LI A + R I SP+
Sbjct: 201 YGNITLGLIRALLAREILSPA 221


>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 754

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +2

Query: 110 AKRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDXLYFDLGLPHRDATDDQVTID 286
           AK+   A+   E +  ++ R+M  K     +F   K    + + GLP +   +D   ID
Sbjct: 664 AKQAKKAQAKAEQEKKQVERVMKGKTSPSEMFKMFKEYLSFDEAGLPTKMRGEDGSEID 722


>SPAC1002.11 |gaa1||GPI-anchor transamidase complex subunit Gaa1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 581

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 20/72 (27%), Positives = 30/72 (41%)
 Frame = -2

Query: 417 IMLRIVPFGLSHIFFNFNSSTLCSSGVIVAHLMPTLCFRMACAESMVT*SSVASRCGRPK 238
           + +R+ PF   H+FF   S TL     I       +  R+  +ES +    V +      
Sbjct: 7   VQIRVFPFLQRHLFFLQLSLTLIGLSWIFILPRNEIIDRLHVSESALLPGQVNTYFENRY 66

Query: 237 SK*XQSTLTYGN 202
           SK   S+LT  N
Sbjct: 67  SKTVSSSLTAAN 78


>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 949

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 14/64 (21%), Positives = 29/64 (45%)
 Frame = +2

Query: 185  IKERLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEE 364
            ++ER+     ++  L +D+  PH    D   ++   + +L       C  + PD  R+ E
Sbjct: 833  MRERVAISCSQIASLSWDIDSPHGYIIDLSKSLIKLYKVLHRYSQRDCVEVIPDVIRMFE 892

Query: 365  LKLK 376
             +L+
Sbjct: 893  DRLQ 896


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,670,303
Number of Sequences: 5004
Number of extensions: 28547
Number of successful extensions: 66
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 66
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)