Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30960
(424 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0194 + 28327328-28327376,28327699-28327742,28327852-283279... 156 8e-39
01_06_0109 - 26526691-26526775,26526894-26527019,26527228-265273... 155 1e-38
01_01_1031 + 8169505-8169553,8169831-8169905,8170395-8170438,817... 118 1e-27
04_04_0457 + 25359486-25359571,25360690-25360782,25361561-253616... 90 6e-19
04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925 27 4.7
12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831 27 8.2
07_03_1395 - 26255776-26256043,26256194-26256414,26256550-262567... 27 8.2
>05_07_0194 +
28327328-28327376,28327699-28327742,28327852-28327961,
28328250-28328287,28328371-28328448,28328527-28328580,
28328663-28328764,28329152-28329237,28329327-28329430,
28329542-28329610,28329689-28329804,28329949-28329983,
28330152-28330294,28330473-28330598,28330700-28330784
Length = 412
Score = 156 bits (378), Expect = 8e-39
Identities = 66/101 (65%), Positives = 84/101 (83%)
Frame = +2
Query: 116 RVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSAH 295
++ A P+VEMDGDEMTR+ W IK++LIFP++++D YFDLGLP+RD TDD+VT+++A
Sbjct: 5 KIKVANPIVEMDGDEMTRVFWKSIKDKLIFPFLELDIKYFDLGLPYRDQTDDKVTVEAAE 64
Query: 296 AILKHNVGIKCATITPDEQRVEELKLKKMWLSPNGTIRNII 418
A LK+NV IKCATITPDE RV+E LK MW SPNGTIRNI+
Sbjct: 65 ATLKYNVAIKCATITPDEARVKEFSLKSMWKSPNGTIRNIL 105
>01_06_0109 -
26526691-26526775,26526894-26527019,26527228-26527370,
26527521-26527555,26527676-26527791,26527868-26527936,
26528070-26528173,26528253-26528338,26528429-26528530,
26528609-26528662,26528763-26528840,26528936-26528973,
26529235-26529344,26529463-26529506,26530232-26530280
Length = 412
Score = 155 bits (376), Expect = 1e-38
Identities = 67/102 (65%), Positives = 85/102 (83%)
Frame = +2
Query: 113 KRVVAAKPVVEMDGDEMTRIMWAKIKERLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSA 292
+++ A P+VEMDGDEMTRI W IK++LIFP++ +D Y+DLG+ HRDATDD+VT+++A
Sbjct: 4 EKIKVANPIVEMDGDEMTRIFWQSIKDKLIFPFLDLDIKYYDLGVLHRDATDDKVTVEAA 63
Query: 293 HAILKHNVGIKCATITPDEQRVEELKLKKMWLSPNGTIRNII 418
A LK+NV IKCATITPDE RV+E LK+MW SPNGTIRNII
Sbjct: 64 EATLKYNVAIKCATITPDEARVKEFNLKQMWKSPNGTIRNII 105
>01_01_1031 +
8169505-8169553,8169831-8169905,8170395-8170438,
8170633-8170742,8170960-8170997,8171055-8171186,
8171298-8171351,8171424-8171525,8172679-8172764,
8172870-8172973,8173056-8173124,8173156-8173209,
8173210-8173325,8173420-8173454,8173637-8173779,
8174105-8174227,8174305-8174398
Length = 475
Score = 118 bits (285), Expect = 1e-27
Identities = 61/112 (54%), Positives = 75/112 (66%), Gaps = 18/112 (16%)
Frame = +2
Query: 137 VVEMDGDEMTRIMWAKIKERLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSAHAILKHNV 316
V GDEMTR++W IK++LIFP++ +D Y+DLGLP+RDAT D+VTI+SA A LK+NV
Sbjct: 37 VTRNSGDEMTRVIWKWIKDKLIFPFLDLDIKYYDLGLPNRDATGDKVTIESAEATLKYNV 96
Query: 317 GIKCATITP------------------DEQRVEELKLKKMWLSPNGTIRNII 418
IKCATITP DE RV+E L MW SPNGTIRNI+
Sbjct: 97 AIKCATITPVLDTQFKFDFGRTIHEPTDEGRVKEFNLSAMWKSPNGTIRNIL 148
>04_04_0457 +
25359486-25359571,25360690-25360782,25361561-25361622,
25361758-25361816,25363624-25363733,25364795-25364829,
25365469-25365546,25365952-25366005,25366277-25366362,
25366468-25366571,25366986-25367054,25367135-25367250,
25367387-25367421,25367512-25367654,25367808-25367930,
25368463-25368556
Length = 448
Score = 90.2 bits (214), Expect = 6e-19
Identities = 45/74 (60%), Positives = 55/74 (74%)
Frame = +2
Query: 197 LIFPYVKVDXLYFDLGLPHRDATDDQVTIDSAHAILKHNVGIKCATITPDEQRVEELKLK 376
LIFPY+++D YFDLGL +RDATDD+VT++SA A L T+T DE RV+E KLK
Sbjct: 101 LIFPYLELDVKYFDLGLLNRDATDDKVTVESAEATLDLYSNSFFMTLT-DETRVKEFKLK 159
Query: 377 KMWLSPNGTIRNII 418
MW SPNGTIRNI+
Sbjct: 160 SMWRSPNGTIRNIL 173
>04_01_0603 - 7931162-7931446,7932217-7932718,7932824-7934925
Length = 962
Score = 27.5 bits (58), Expect = 4.7
Identities = 16/42 (38%), Positives = 23/42 (54%)
Frame = +2
Query: 287 SAHAILKHNVGIKCATITPDEQRVEELKLKKMWLSPNGTIRN 412
S +AI+ + + I + QRV +KLK WL P+ IRN
Sbjct: 114 SHYAIVFDGIVAEIVQIEQEIQRV--IKLKDKWLQPSQLIRN 153
>12_02_1214 - 27061794-27062178,27063018-27063766,27064427-27064831
Length = 512
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/38 (28%), Positives = 19/38 (50%)
Frame = +2
Query: 194 RLIFPYVKVDXLYFDLGLPHRDATDDQVTIDSAHAILK 307
R IF + + LYF + + +DQ+ + H IL+
Sbjct: 119 RKIFAFTNSEKLYFQARIAEAEILEDQLLVALGHRILE 156
>07_03_1395 -
26255776-26256043,26256194-26256414,26256550-26256786,
26257476-26257776,26258027-26258106
Length = 368
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 96 LVSDANWFTHFRIFVVLVLAMFRY 25
L S +WF FR+ V+L ++ F Y
Sbjct: 222 LASKGSWFKQFRVIVLLRISPFPY 245
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,008,738
Number of Sequences: 37544
Number of extensions: 194150
Number of successful extensions: 408
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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