Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30960
         (424 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   3.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   7.5  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   7.5  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    20   10.0 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   10.0 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    20   10.0 

>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.8 bits (44), Expect = 3.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = -1

Query: 52  CTSISHVSILFVYSP 8
           C SIS++S+L  Y P
Sbjct: 246 CVSISYLSVLAFYLP 260


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 423 RPIMLRIVPFGLSHIFFNFN 364
           +P +++I  + L+H  FNF+
Sbjct: 484 KPFLIKIRQYRLNHKPFNFH 503


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 20.6 bits (41), Expect = 7.5
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = -2

Query: 423 RPIMLRIVPFGLSHIFFNFN 364
           +P +++I  + L+H  FNF+
Sbjct: 484 KPFLIKIRQYRLNHKPFNFH 503


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +2

Query: 299 ILKHNVGIKCATITPDEQRVEELKLKKMWLSPNGTIRNIIG 421
           ++    G K  +  P     + ++L+ + +SP  +IRN  G
Sbjct: 348 VISSKSGSKANSPFPGSTEADIIELQDLRMSPLPSIRNRSG 388


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = -3

Query: 302 EWHALSRW*PDHQWRH 255
           EW+ L+   P H W H
Sbjct: 529 EWNPLTDTVPIHTWIH 544


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 20.2 bits (40), Expect = 10.0
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -1

Query: 196 SLFDLSPHDACHLITIHL 143
           +L+ L PH A  L T HL
Sbjct: 99  ALWSLVPHMAWQLSTAHL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,730
Number of Sequences: 438
Number of extensions: 1907
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)