Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30956
         (708 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    27   2.0  
SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyc...    25   8.0  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    25   8.0  
SPAC458.03 |||nuclear telomere cap complex subunit |Schizosaccha...    25   8.0  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    25   8.0  

>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = -2

Query: 113 RFWVYYFSTRLQKKQRKVKHFYVLFKQL 30
           RFW   +  RL K Q+ + H Y++  +L
Sbjct: 879 RFWALKYIERLPKVQKNIYHGYLMVSEL 906


>SPBC1703.07 |||ATP citrate synthase subunit 1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 615

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 8/24 (33%), Positives = 19/24 (79%)
 Frame = +2

Query: 542 ISGAINRTSYDLFSENVVLFVFSI 613
           ++G++++ SY+LFS++   FV+ +
Sbjct: 1   MAGSVDKPSYELFSKDTRAFVYGM 24


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 562 SIYRPRNPLYTKFYENRWNRFR 497
           S+ +PR      F E  WNRFR
Sbjct: 82  SVEKPRGRNMNAFEETSWNRFR 103


>SPAC458.03 |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 868

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -1

Query: 123 YFISLLGILFFYSFAEEAEKSETFL 49
           Y++  LGILFF +F  + E +   L
Sbjct: 733 YYLKTLGILFFETFTSKIEGANRML 757


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = -3

Query: 367 QAYLKLYVKCVDTSTTVALRSLDH 296
           +AYLKL  +  DT  T  LR  DH
Sbjct: 332 EAYLKLIDQAKDTRITHLLRQTDH 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,763,153
Number of Sequences: 5004
Number of extensions: 56430
Number of successful extensions: 106
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)