Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30956
         (708 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80025-3|AAB37358.1|  202|Caenorhabditis elegans Hypothetical pr...    32   0.46 
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    29   3.3  

>U80025-3|AAB37358.1|  202|Caenorhabditis elegans Hypothetical
           protein F02C9.4 protein.
          Length = 202

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -2

Query: 149 HFVTP*CNLISFRFWVYYFST 87
           HF+T  CN  ++RFW++ F T
Sbjct: 158 HFITKPCNESTYRFWIFVFGT 178


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 16/33 (48%), Positives = 19/33 (57%)
 Frame = -2

Query: 575 NRS*FDLSPPKSPVY*IL*KSLEPFPRFRLYTY 477
           N + F+L  PKSPV  I   SLEPF   R+  Y
Sbjct: 76  NATLFELLEPKSPVLSIKPDSLEPFGTTRMSIY 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,047,754
Number of Sequences: 27780
Number of extensions: 309488
Number of successful extensions: 646
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1645110168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)