Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30955
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   370   e-105
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   361   e-102
EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor 1-a...   233   2e-63
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   153   1e-39
X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.    24   1.2  
EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2 prot...    24   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.8  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.7  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.7  
L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein pro...    22   6.4  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  370 bits (910), Expect = e-105
 Identities = 174/189 (92%), Positives = 180/189 (95%)
 Frame = +2

Query: 2   KIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 181
           KIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKN
Sbjct: 255 KIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKN 314

Query: 182 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 361
           VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFA+
Sbjct: 315 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAD 374

Query: 362 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 541
           IKEK DRR GK+TE NPKSIKSGDAAIV LVPSKP+C E+FQEFPPLGRFAVRDMRQTVA
Sbjct: 375 IKEKCDRRNGKTTEENPKSIKSGDAAIVMLVPSKPMCAEAFQEFPPLGRFAVRDMRQTVA 434

Query: 542 VGVIKAVNF 568
           VGVIKAV F
Sbjct: 435 VGVIKAVTF 443


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  361 bits (887), Expect = e-102
 Identities = 168/189 (88%), Positives = 179/189 (94%)
 Frame = +2

Query: 2   KIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 181
           KIGGIGTVPVGRVETG+LKPG +V FAPA +TTEVKSVEMHHEAL EA+PGDNVGFNVKN
Sbjct: 255 KIGGIGTVPVGRVETGILKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDNVGFNVKN 314

Query: 182 VSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 361
           +SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE
Sbjct: 315 ISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNHPGQISNGYTPVLDCHTAHIACKFAE 374

Query: 362 IKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSKPLCVESFQEFPPLGRFAVRDMRQTVA 541
           IKEK DRRTGK+TE NPKSIKSGDAAIV L P+KP+CVE+FQEFPPLGRFAVRDMRQTVA
Sbjct: 375 IKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTKPMCVEAFQEFPPLGRFAVRDMRQTVA 434

Query: 542 VGVIKAVNF 568
           VGVIK+V F
Sbjct: 435 VGVIKSVTF 443



 Score = 21.8 bits (44), Expect = 6.4
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 159 LSPGTASWRASWCISTDLTSVVMLAGAKTTMVPGFN 52
           L PG     A   ++T++ SV M   A T  +PG N
Sbjct: 272 LKPGMLVTFAPAALTTEVKSVEMHHEALTEALPGDN 307


>EF013227-1|ABK54581.1|  119|Apis mellifera elongation factor
           1-alpha protein.
          Length = 119

 Score =  233 bits (569), Expect = 2e-63
 Identities = 108/119 (90%), Positives = 113/119 (94%)
 Frame = +2

Query: 107 KSVEMHHEALQEAVPGDNVGFNVKNVSVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNH 286
           KSVEMHHEAL EA+PGDNVGFNVKN+SVKELRRGYVAGDSKN PP+GAADFTAQVIVLNH
Sbjct: 1   KSVEMHHEALTEALPGDNVGFNVKNISVKELRRGYVAGDSKNQPPRGAADFTAQVIVLNH 60

Query: 287 PGQISNGYTPVLDCHTAHIACKFAEIKEKVDRRTGKSTEVNPKSIKSGDAAIVNLVPSK 463
           PGQISNGYTPVLDCHTAHIACKFAEIKEK DRRTGK+TE NPKSIKSGDAAIV L P+K
Sbjct: 61  PGQISNGYTPVLDCHTAHIACKFAEIKEKCDRRTGKTTEENPKSIKSGDAAIVMLQPTK 119


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  153 bits (372), Expect = 1e-39
 Identities = 72/77 (93%), Positives = 74/77 (96%)
 Frame = +2

Query: 2   KIGGIGTVPVGRVETGVLKPGTIVVFAPANITTEVKSVEMHHEALQEAVPGDNVGFNVKN 181
           KIGGIGTVPVGRVETGVLKPG +V FAPA +TTEVKSVEMHHEALQEAVPGDNVGFNVKN
Sbjct: 198 KIGGIGTVPVGRVETGVLKPGMVVTFAPAGLTTEVKSVEMHHEALQEAVPGDNVGFNVKN 257

Query: 182 VSVKELRRGYVAGDSKN 232
           VSVKELRRGYVAGDSKN
Sbjct: 258 VSVKELRRGYVAGDSKN 274


>X16709-1|CAA34681.1|  162|Apis mellifera phospholipase A-2 protein.
          Length = 162

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 675 KYRSCMKNCAVNSSSYFLPLVAFS 604
           K+  C+KN A   SSYF+  + F+
Sbjct: 94  KFYDCLKNSADTISSYFVGKMYFN 117


>EF373554-1|ABQ28728.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 675 KYRSCMKNCAVNSSSYFLPLVAFS 604
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AF438408-1|AAL30844.1|  167|Apis mellifera phospholipase A2
           protein.
          Length = 167

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 675 KYRSCMKNCAVNSSSYFLPLVAFS 604
           K+  C+KN A   SSYF+  + F+
Sbjct: 99  KFYDCLKNSADTISSYFVGKMYFN 122


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 185 SVKELRRGYVAGDSKNNPPKGAADFTAQVIVLNHPG 292
           S ++LR  ++A +   + PKG      Q++VLN  G
Sbjct: 283 STRDLREIHLAYNGLRDLPKGIFTRLEQLLVLNLAG 318


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -3

Query: 388 STTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 209
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 208 TTT 200
           T T
Sbjct: 137 TVT 139


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 18/63 (28%), Positives = 24/63 (38%)
 Frame = -3

Query: 388 STTVNFFFDFCKFAGNVGSVAIQYWCVTV*DLTRMVKHNDLSCKICSTLRWVVFGVTSNI 209
           ST+ N  F   K  G  G   +   CVT     R   HN +  + C      V   + N+
Sbjct: 77  STSENKTFPTIKIVGYKGRALVVVSCVTKDQPYRPHPHNLVGKEACKQGVCTVEVSSENM 136

Query: 208 TTT 200
           T T
Sbjct: 137 TVT 139


>L01588-1|AAA27735.1|   74|Apis mellifera zinc finger protein
           protein.
          Length = 74

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = +1

Query: 304 RLHTSIGLPHCPHC 345
           RLHT     HC HC
Sbjct: 30  RLHTGEKPYHCSHC 43


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,509
Number of Sequences: 438
Number of extensions: 4045
Number of successful extensions: 17
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)