Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30954
         (704 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    27   2.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    27   2.0  
SPCC1259.11c |gyp2||GTPase activating protein Gyp2 |Schizosaccha...    27   3.5  
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb...    26   4.6  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   8.0  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    25   8.0  

>SPAC18G6.09c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 312

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = -2

Query: 376 KSAFSELEPFSGSDFDFLTEGTTPSSAVLEPGPFSCRSPFTSQL 245
           KS  S +   SG+D  F +  ++ ++++L  GP    SP  S L
Sbjct: 129 KSVSSYVSNSSGADRSFSSNSSSDTNSILYAGPTFTHSPAASNL 172


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 20/93 (21%), Positives = 42/93 (45%), Gaps = 1/93 (1%)
 Frame = +3

Query: 267  LQLNGPGSKTAELGVVPSVKKSKSDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLV 446
            L +N         G +P++  S S     +++      R + +T + R  Y+ + +  ++
Sbjct: 1302 LDVNNQRHTLISAGRIPNLDFSDSVTSMEASTFHDGSIRLVVVTKWSRIVYLDVGMMRVL 1361

Query: 447  STSE-EMDVISMSFILPSAQCDLDLTTQTKGWL 542
            S+ +  +   S + ++ S  C+  L   TKGWL
Sbjct: 1362 SSDQLPLQCGSATSVVVSEGCNWALIGTTKGWL 1394


>SPCC1259.11c |gyp2||GTPase activating protein Gyp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 720

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -3

Query: 258 LHHNCEDSWAPGQFLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLL 85
           LH + ED+ + G FL S A  R+C   +   + +    + L + +  P+     + L+
Sbjct: 125 LHASLEDASSVGLFLLSLASERVCFSESANSQEIESIDLGLGSQFGYPIASSNTNGLI 182


>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
           membrane proteins, ESCRT 0 complex|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 610

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = +3

Query: 249 CDVKGDLQLNGPGSKTAELGVVPSVKKSKSDPEKG-SNSEKADFERAIELT 398
           CD    L+    GSK+          K++  P K  +N+E  D +RAIEL+
Sbjct: 222 CDSCYSLRTKPKGSKSRARNERKFHAKTRKTPSKPVTNNEDEDIKRAIELS 272


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +1

Query: 1   LQHRLLVLSSPHLTRTVHSHLKWRNAH 81
           L+H LL   S  L + + S LKWRN H
Sbjct: 369 LRHELL---SAGLQKAIDSLLKWRNRH 392


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +2

Query: 65  SGGTLTNNKEEAHRIVTGKLYAVGSATPPSERRLSVPA-TTIQS 193
           +GGT+TN   E  + +T  L A  S T P    + +P  +TI S
Sbjct: 324 TGGTVTNTVYEGSQTITSTL-ATASGTVPGTVEVILPGPSTIYS 366


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,953,892
Number of Sequences: 5004
Number of extensions: 63848
Number of successful extensions: 190
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 190
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)