Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30954
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0267 + 21938300-21938371,21938963-21939235,21940665-219412... 66 2e-11
04_04_1099 - 30886361-30886591,30886739-30886941,30887030-308875... 65 6e-11
03_05_0434 + 24252994-24253449,24254791-24254877,24255450-242557... 63 2e-10
07_03_0968 - 23027940-23028149,23028800-23029002,23029610-230301... 52 4e-07
03_06_0437 - 33912326-33912520,33912870-33912998,33913147-339133... 33 0.17
05_06_0191 - 26265460-26267016,26267858-26268356,26268789-262688... 29 2.7
01_01_0161 - 1385408-1385566,1385815-1385943,1386164-1386322,138... 29 3.6
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 29 4.8
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 29 4.8
09_01_0042 + 764349-764763,764853-764902,765096-765172,766179-76... 28 6.3
03_05_0754 + 27452203-27452242,27452360-27455611,27456480-274565... 28 8.3
02_02_0737 - 13529180-13529543,13530661-13531178 28 8.3
>09_06_0267 +
21938300-21938371,21938963-21939235,21940665-21941202,
21941288-21941490,21941603-21941827
Length = 436
Score = 66.5 bits (155), Expect = 2e-11
Identities = 26/71 (36%), Positives = 47/71 (66%)
Frame = +3
Query: 378 ERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIF 557
+ A+ G+G+F +LA G+ SE M+++ +SF+ S Q + +L+ Q + + S++F
Sbjct: 35 DEALISMGFGKFQAFVLAYSGMAKISEAMEMMLLSFVGQSVQAEWELSAQAESLITSVVF 94
Query: 558 IGMMVGAYAWG 590
+GM+VGAY+WG
Sbjct: 95 VGMLVGAYSWG 105
>04_04_1099 -
30886361-30886591,30886739-30886941,30887030-30887555,
30887751-30887988,30888592-30888695,30888784-30889059,
30889216-30889218
Length = 526
Score = 64.9 bits (151), Expect = 6e-11
Identities = 25/69 (36%), Positives = 47/69 (68%)
Frame = +3
Query: 384 AIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKGWLNSIIFIG 563
A+ +G+GR+ ++L+ G+ +E M+++ +SF+ PS Q + LT+ + + SI+F+G
Sbjct: 15 ALLSSGFGRYQILILSYAGVGLIAEAMEMMLLSFVGPSVQLEWKLTSHQESMITSIVFVG 74
Query: 564 MMVGAYAWG 590
M++GAY WG
Sbjct: 75 MLIGAYTWG 83
>03_05_0434 +
24252994-24253449,24254791-24254877,24255450-24255748,
24256146-24256383,24256907-24257441,24257527-24257729,
24258311-24258520
Length = 675
Score = 63.3 bits (147), Expect = 2e-10
Identities = 25/79 (31%), Positives = 49/79 (62%)
Frame = +3
Query: 357 NSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLDLTTQTKG 536
N E + A+E G+G+F ++LA G+ E M+++ +SF+ P + + +++ + +
Sbjct: 195 NMETYTTDEALEFMGFGKFQLLVLAYAGMGWVVESMEIMLLSFVGPLVREEWNISAENES 254
Query: 537 WLNSIIFIGMMVGAYAWGF 593
L+S++F GM++GA WGF
Sbjct: 255 LLSSVVFAGMLIGASGWGF 273
>07_03_0968 -
23027940-23028149,23028800-23029002,23029610-23030138,
23030342-23030579,23031121-23031168,23031199-23031494
Length = 507
Score = 52.0 bits (119), Expect = 4e-07
Identities = 24/85 (28%), Positives = 49/85 (57%)
Frame = +3
Query: 336 SDPEKGSNSEKADFERAIELTGYGRFHYMLLAVCGLVSTSEEMDVISMSFILPSAQCDLD 515
++ E+ E + A+ G+GRF ++LA + +E M+V+ +SF+ PS + +
Sbjct: 6 AEEEEEEEEETYTTDDALTRAGFGRFQALVLAYACVGWVAEAMEVMLLSFVGPSVKAEWG 65
Query: 516 LTTQTKGWLNSIIFIGMMVGAYAWG 590
++ +G ++S++F GM++GA G
Sbjct: 66 VSGAAEGLVSSVVFAGMLIGACLGG 90
>03_06_0437 -
33912326-33912520,33912870-33912998,33913147-33913317,
33913877-33913993,33914150-33914800
Length = 420
Score = 33.5 bits (73), Expect = 0.17
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = -2
Query: 613 DQASLPLNPQAYAPTIIPMKIILFSHPLV*VVRSKSHCAEGR--MNDIEMTSISSEVLTR 440
D+ +P PQ P I+LF P++ VR++ + E D++M I VLTR
Sbjct: 209 DEEDVP--PQEVYPEGTQFMILLFERPIIYDVRARPNLVESTSGSRDLQMVKIGLRVLTR 266
Query: 439 P 437
P
Sbjct: 267 P 267
>05_06_0191 -
26265460-26267016,26267858-26268356,26268789-26268859,
26269079-26269515,26269626-26269681,26269682-26270479,
26270918-26270973
Length = 1157
Score = 29.5 bits (63), Expect = 2.7
Identities = 14/31 (45%), Positives = 15/31 (48%)
Frame = +1
Query: 415 TTCCWQYAVSSALPRRWTSSRCRSSYPRHSA 507
T CCW + AL R WT R RS H A
Sbjct: 538 TPCCWYFLWLVALNRCWTVYRLRSRGISHPA 568
>01_01_0161 -
1385408-1385566,1385815-1385943,1386164-1386322,
1387228-1387571,1387641-1387905,1387998-1388075,
1388207-1388260,1389341-1389361,1389453-1389578,
1389696-1389863,1389923-1390313,1390629-1390710,
1391175-1391536,1391806-1392630,1392956-1393476
Length = 1227
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 3/45 (6%)
Frame = +2
Query: 437 RSRQHFRGDGRHLDVVHPTLGTVRLRPHHSD*RMA---KQYNLHR 562
RS H + D H T+GT R+ PHHS R+A +Y HR
Sbjct: 826 RSYAHVQVDSPGTATRH-TVGTTRITPHHSRDRLATVRDEYPTHR 869
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 28.7 bits (61), Expect = 4.8
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +2
Query: 77 LTNNKEEAHRIVTGKLYAVGS-ATPPSERRLSVPATTIQSR 196
LT+NKE + IVT + AVGS P + L P + + R
Sbjct: 421 LTDNKERSRIIVTSRFQAVGSTCCRPENKDLLYPISFLSPR 461
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -3
Query: 246 CEDSWAPGQ-FLPSYAGGRLCMVVAGTLKRLSLGGVALPTAYSLPVTIRCASSLLF 82
C +S P FLP+ GRLC + +K L L T++ T++C SS +F
Sbjct: 187 CHESVNPEHVFLPTTRHGRLCKHCSSKMKILDAINAHLGTSF----TVKCPSSDIF 238
>09_01_0042 +
764349-764763,764853-764902,765096-765172,766179-766236,
767481-767607,768665-768769,768842-769424,769470-769775,
770048-770139,770391-770440
Length = 620
Score = 28.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = -2
Query: 361 ELEPFSGSDFDFLTEGTTPSSAVLEPGPF 275
E+ P SGS F+FLTE T S PG +
Sbjct: 354 EMMPVSGSPFNFLTETTIGSRIDQVPGGY 382
>03_05_0754 + 27452203-27452242,27452360-27455611,27456480-27456533,
27456774-27456872,27456948-27457012,27457476-27457575,
27458326-27458408,27458494-27458569,27458920-27459698
Length = 1515
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Frame = +3
Query: 615 QASAHS-HLHSERARHRRLLLQSELRALHVL 704
QAS+ + HLH R RR L LRA+ VL
Sbjct: 1256 QASSSAVHLHGHHGRLRRFLAAGRLRAIDVL 1286
>02_02_0737 - 13529180-13529543,13530661-13531178
Length = 293
Score = 27.9 bits (59), Expect = 8.3
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 2/40 (5%)
Frame = -3
Query: 207 YAGGRLCMVVAGTLKRL--SLGGVALPTAYSLPVTIRCAS 94
+AGG + AGTL+RL LGG TA++L T+R +S
Sbjct: 186 HAGG-FVLHPAGTLRRLRHGLGGFTTLTAWALRRTLRASS 224
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,925,206
Number of Sequences: 37544
Number of extensions: 536492
Number of successful extensions: 1714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1638
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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