Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30953
         (305 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    27   0.47 
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    25   3.3  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   3.3  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    24   5.8  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    23   7.7  
SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces...    23   7.7  

>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 27.5 bits (58), Expect = 0.47
 Identities = 15/51 (29%), Positives = 26/51 (50%)
 Frame = +2

Query: 11   NLXILLFIY*WEHILSPNNTDIHTFKRTSSRPTLFKMVTE*HRFCQNKNNI 163
            NL +++  +    +L+  +  IHTF + S  P+LFK +     FC    +I
Sbjct: 1397 NLGVVVSAFRVVVLLTSASEMIHTFVKLSGLPSLFKAMRACSGFCNESLHI 1447


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 108 PYLKWLRNNIDFVKIKTTFL 167
           PY+KWL+      K ++TFL
Sbjct: 116 PYIKWLKKRKGHAKGESTFL 135


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +2

Query: 110  LFKMVTE*HRFCQNKNNILAKKFKVF 187
            L KMVT   RF QN+ N L  K+  F
Sbjct: 2233 LLKMVTFEGRFSQNEQNDLFNKYLSF 2258


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
           Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
 Frame = -3

Query: 102 RELVRLKV--CISVLLGLSICSHQ 37
           R L R+K   C   ++G S+CSHQ
Sbjct: 624 RFLQRMKPYDCYDFMIGASLCSHQ 647


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +3

Query: 81  LLSERAHDPPYLKWLRNNIDFVKIKTTFLQKNLK 182
           LLS++   PP+   ++N++D       F   N+K
Sbjct: 570 LLSKKKVQPPFKPNVQNDLDVSNFDKEFTNTNVK 603


>SPCC777.07 |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 378

 Score = 23.4 bits (48), Expect = 7.7
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = -2

Query: 298 FYFLDKNFGFYFFMIQHTKIHTI 230
           F  LDKN+GF++       +H++
Sbjct: 292 FAHLDKNYGFFYERWGDAPVHSL 314


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,175,199
Number of Sequences: 5004
Number of extensions: 21194
Number of successful extensions: 50
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)