Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30953
         (305 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL834311-1|CAD38981.1|  127|Homo sapiens hypothetical protein pr...    30   1.5  
X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.                   28   4.6  
M22734-1|AAA60048.1| 1089|Homo sapiens platelet-derived growth f...    28   4.6  
M21574-1|AAA96715.1| 1089|Homo sapiens platelet-derived growth f...    28   4.6  
D50017-1|BAA08742.1| 1089|Homo sapiens alpha-platelet-derived gr...    28   4.6  
BC063414-1|AAH63414.1|  743|Homo sapiens PDGFRA protein protein.       28   4.6  
AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix...    28   4.6  
AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix...    28   4.6  
AL138755-7|CAI14598.1|  254|Homo sapiens SWI/SNF related, matrix...    28   4.6  
AL138755-4|CAI14595.1|  171|Homo sapiens SWI/SNF related, matrix...    28   4.6  
AF399609-1|AAK95094.1|  218|Homo sapiens olfactory receptor prot...    27   8.1  
AB065737-1|BAC05958.1|  317|Homo sapiens seven transmembrane hel...    27   8.1  

>AL834311-1|CAD38981.1|  127|Homo sapiens hypothetical protein
           protein.
          Length = 127

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 295 YFLDKNFGFYFFMIQHTKIHTILNFHPSTLIF 200
           YFLD  F F FF+I HT  +   N + +  +F
Sbjct: 58  YFLDTRFRFNFFLIVHTAFYLESNLNVAQPLF 89


>X72889-1|CAA51407.1| 1586|Homo sapiens HBRM protein.
          Length = 1586

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 24   SCLFIDGNIY*APTIPIYILLSERAHDPPYLKWLRNNIDFVKIK 155
            S L I+GN        ++I L  R   P Y + +R  +DF KIK
Sbjct: 1406 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 1449


>M22734-1|AAA60048.1| 1089|Homo sapiens platelet-derived growth
           factor A receptor protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  YILLSERAHDPPYLKWLRNNIDFVK 149
           + ++  RA+ PP + WL+NN+  ++
Sbjct: 334 HFVVEVRAYPPPRISWLKNNLTLIE 358


>M21574-1|AAA96715.1| 1089|Homo sapiens platelet-derived growth
           factor receptor A chain protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  YILLSERAHDPPYLKWLRNNIDFVK 149
           + ++  RA+ PP + WL+NN+  ++
Sbjct: 334 HFVVEVRAYPPPRISWLKNNLTLIE 358


>D50017-1|BAA08742.1| 1089|Homo sapiens alpha-platelet-derived
           growth factor receptor protein.
          Length = 1089

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  YILLSERAHDPPYLKWLRNNIDFVK 149
           + ++  RA+ PP + WL+NN+  ++
Sbjct: 334 HFVVEVRAYPPPRISWLKNNLTLIE 358


>BC063414-1|AAH63414.1|  743|Homo sapiens PDGFRA protein protein.
          Length = 743

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 8/25 (32%), Positives = 17/25 (68%)
 Frame = +3

Query: 75  YILLSERAHDPPYLKWLRNNIDFVK 149
           + ++  RA+ PP + WL+NN+  ++
Sbjct: 334 HFVVEVRAYPPPRISWLKNNLTLIE 358


>AL359076-3|CAI12967.1| 1590|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1590

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 24   SCLFIDGNIY*APTIPIYILLSERAHDPPYLKWLRNNIDFVKIK 155
            S L I+GN        ++I L  R   P Y + +R  +DF KIK
Sbjct: 1410 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 1453


>AL138755-8|CAI14599.1| 1590|Homo sapiens SWI/SNF related, matrix
            associated, actin dependent regulator of chromatin, sub
            protein.
          Length = 1590

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 24   SCLFIDGNIY*APTIPIYILLSERAHDPPYLKWLRNNIDFVKIK 155
            S L I+GN        ++I L  R   P Y + +R  +DF KIK
Sbjct: 1410 SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 1453


>AL138755-7|CAI14598.1|  254|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 254

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 24  SCLFIDGNIY*APTIPIYILLSERAHDPPYLKWLRNNIDFVKIK 155
           S L I+GN        ++I L  R   P Y + +R  +DF KIK
Sbjct: 74  SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 117


>AL138755-4|CAI14595.1|  171|Homo sapiens SWI/SNF related, matrix
           associated, actin dependent regulator of chromatin, sub
           protein.
          Length = 171

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 24  SCLFIDGNIY*APTIPIYILLSERAHDPPYLKWLRNNIDFVKIK 155
           S L I+GN        ++I L  R   P Y + +R  +DF KIK
Sbjct: 74  SQLEIEGNSSGRQLSEVFIQLPSRKELPEYYELIRKPVDFKKIK 117


>AF399609-1|AAK95094.1|  218|Homo sapiens olfactory receptor
           protein.
          Length = 218

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 277 FGFYFFMIQHTKIHTILNFHPSTLIFYLLI 188
           +G  FFM   TK+ + +NF+    +FY ++
Sbjct: 187 YGTLFFMYVQTKVTSSINFNKVVSVFYSVV 216


>AB065737-1|BAC05958.1|  317|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 317

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -2

Query: 277 FGFYFFMIQHTKIHTILNFHPSTLIFYLLI 188
           +G  FFM   TK+ + +NF+    +FY ++
Sbjct: 256 YGTLFFMYVQTKVTSSINFNKVVSVFYSVV 285


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,428,595
Number of Sequences: 237096
Number of extensions: 650486
Number of successful extensions: 1386
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1386
length of database: 76,859,062
effective HSP length: 78
effective length of database: 58,365,574
effective search space used: 1342408202
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)