Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30953
         (305 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                21   2.6  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    20   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.0  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    20   7.9  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    20   7.9  

>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 21.4 bits (43), Expect = 2.6
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +3

Query: 81  LLSERAHDPPYLKW 122
           LL +R + P Y+KW
Sbjct: 467 LLQDREYCPRYIKW 480


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = -2

Query: 271 FYFFMIQHTKIHTILNFHPSTLIFYLLIXXXXXXXXXXXFILTKSMLF 128
           FY       KI   +N   S  +F+LLI            +L K +LF
Sbjct: 257 FYLPADSGEKIALCINILLSQTMFFLLISEIIPSTSLALPLLGKYLLF 304


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 53   LSPNNTDIHTF 85
            L PNNT +H+F
Sbjct: 1730 LHPNNTLLHSF 1740


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.0
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 53   LSPNNTDIHTF 85
            L PNNT +H+F
Sbjct: 1726 LHPNNTLLHSF 1736


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 260 YDTTYKNTYNPKFSSL 213
           Y+  Y N YN  +  L
Sbjct: 101 YNNNYNNNYNNNYKKL 116


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 19.8 bits (39), Expect = 7.9
 Identities = 6/16 (37%), Positives = 8/16 (50%)
 Frame = -1

Query: 260 YDTTYKNTYNPKFSSL 213
           Y+  Y N YN  +  L
Sbjct: 101 YNNNYNNNYNNNYKKL 116


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,165
Number of Sequences: 438
Number of extensions: 1788
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 49
effective length of database: 124,881
effective search space used:  6493812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)