Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30950
         (702 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1522 + 27651983-27652690                                         30   1.5  
04_04_0126 + 22952577-22952871,22952912-22953519,22954125-229545...    30   2.0  
02_05_0930 - 32801737-32801936,32802038-32802107                       29   3.6  
02_05_0338 - 28084169-28084366,28084414-28085225,28085565-280855...    28   6.2  
02_01_0189 - 1273313-1274157,1274595-1275549                           28   6.2  
08_02_1271 - 25762750-25764276                                         28   8.3  
06_01_0353 + 2545995-2546208,2546362-2546492,2546846-2546929,254...    28   8.3  
04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648     28   8.3  
02_05_0561 - 29965968-29966326,29966375-29966414,29966877-299669...    28   8.3  

>08_02_1522 + 27651983-27652690
          Length = 235

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 22/63 (34%), Positives = 29/63 (46%)
 Frame = +1

Query: 166 AGVASAQITLDGIRCGQLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQGYL 345
           A ++S  +T++ I  G L    D YCS E   C P N VC+        G    EC   L
Sbjct: 27  ACISSPSLTIEAISDG-LRGLGDIYCSIEEIMCLPSNQVCSPQQRKLLDG--EMECSLEL 83

Query: 346 LDL 354
           LD+
Sbjct: 84  LDM 86


>04_04_0126 +
           22952577-22952871,22952912-22953519,22954125-22954596,
           22954882-22954955,22955559-22955937,22956659-22956711
          Length = 626

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 12/36 (33%), Positives = 22/36 (61%)
 Frame = +3

Query: 588 RSAETETRTQARNTKPGSPKTNEPTSQREGLRDQNL 695
           R  +TE + + R  + G+P+T  P ++R+  RD+ L
Sbjct: 486 RYRKTEAKNRKRAAEKGNPQTKSPLTRRKSERDEAL 521


>02_05_0930 - 32801737-32801936,32802038-32802107
          Length = 89

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 253 TNRCAPCNVVCNKTHHNYDSGLCVKECQ 336
           T +   C  V N+ +   DSGLCV  CQ
Sbjct: 27  TAQLETCTEVINREYPTCDSGLCVANCQ 54


>02_05_0338 -
           28084169-28084366,28084414-28085225,28085565-28085595,
           28085638-28086214,28086439-28087145,28087188-28087228,
           28087253-28087366,28087517-28088108
          Length = 1023

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 15/56 (26%), Positives = 28/56 (50%)
 Frame = -2

Query: 200 PSRVI*AEATPARIRTHTNPDISLSVISKAPCTFSQEQTQALWYDTF*I*ILTSKP 33
           PS +I +  TP     HT+  +S   +S+AP    +++T   + D F + ++   P
Sbjct: 589 PSEIIPSSITPPEQTEHTHELVSEEDVSEAPRRSKRQRTAKSFGDDFTVYLVDDTP 644


>02_01_0189 - 1273313-1274157,1274595-1275549
          Length = 599

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
 Frame = +1

Query: 154 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAPCNV 279
           VL +AG     +  DG    G  +C  D +CSPE    C P  V
Sbjct: 542 VLGVAGAGGVSVVRDGCALEGLCVCSEDAHCSPEKGYLCRPGRV 585


>08_02_1271 - 25762750-25764276
          Length = 508

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = +1

Query: 154 VLILAGVASAQITLDGIRC-GQLICQLDEYCSPETN-RCAP 270
           VL +AG     +  +G    G  +C  DE+CSPE    C P
Sbjct: 447 VLGVAGAGGVNVARNGCGMEGLCVCSEDEHCSPEKGYLCRP 487


>06_01_0353 +
           2545995-2546208,2546362-2546492,2546846-2546929,
           2546972-2547316,2547327-2547582,2547683-2547879
          Length = 408

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 15/47 (31%), Positives = 25/47 (53%)
 Frame = +1

Query: 70  YHSACVCSCENVHGALEITEREMSGFVCVLILAGVASAQITLDGIRC 210
           YH+A + S  NV+   ++     SGF  V  L   +S+Q+  + +RC
Sbjct: 194 YHNASLSSRYNVNSYCDLLISIFSGFANVSTLPPPSSSQLLYNCMRC 240


>04_03_0329 - 14454840-14454862,14483886-14485630,14485843-14486648
          Length = 857

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
 Frame = +1

Query: 526 QPAKNRVKQ---YPNDLTHHNPHAEAPKPKPELKLEIRNPDPLRRTNQ 660
           Q A  RV+    YP   +      + P+P P  +  +R P P ++ NQ
Sbjct: 542 QGANQRVRYTNPYPGGSSSQQQQQQQPRPAPRPQFVVRVPQPQQQQNQ 589


>02_05_0561 -
           29965968-29966326,29966375-29966414,29966877-29966951,
           29967003-29967107,29967453-29967592,29967691-29967775
          Length = 267

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +1

Query: 214 QLICQLDEYCSPETNRCAPCNVVCNKTHHNYDSGLCVKECQ 336
           +  C  +EY + E+N CA         +  Y  GL   EC+
Sbjct: 182 EFACPFNEYINDESNDCASTMFSYINLYGKYPPGLFANECR 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,970,078
Number of Sequences: 37544
Number of extensions: 374202
Number of successful extensions: 1143
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1135
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1803843684
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)