Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30949
         (656 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.4  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   2.4  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   3.1  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   5.5  
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    25   9.6  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   9.6  

>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +3

Query: 183 DLIQQLNKNKRKLALRENSLDELR 254
           ++ ++LN NK++L + ENSL EL+
Sbjct: 318 NVTEELNNNKQQLLISENSLRELQ 341


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1334

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 224  GEFSLVFVQLLYQINRE-FRSDFKIAVFTAWPMSLSD--VNYKYIIAIWPCCLVIK 66
            GEF L + Q  + +NR+ +RS  +   F  W  S  +  ++Y YI+A  P  + I+
Sbjct: 1214 GEFLLCYSQFAFYVNRDGWRS--RPTWFVVWEGSPQNFALSYPYILAFEPTFIEIR 1267


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 471 MSDARGVKLHDKPEYVSYDLERIKHNY 551
           +S+++  K  DK + VS  LE +KHNY
Sbjct: 417 ISESKLKKRDDKLKRVSSQLEHLKHNY 443


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +2

Query: 299 LTSGDTIIRRYRML*KSGKSGNEILSFKVDLTIFFNIFS*LWV 427
           LT  +  + + R+   S  + +E LSFK  LT+F +  + LW+
Sbjct: 251 LTDEEKTLAKMRIENDSSSAISEKLSFKQSLTVFKHPIAILWL 293


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 10/17 (58%), Positives = 13/17 (76%)
 Frame = -1

Query: 143 TAWPMSLSDVNYKYIIA 93
           TA P  +SD+N+ YIIA
Sbjct: 303 TATPFEVSDMNWAYIIA 319


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +3

Query: 495 LHDKPEYVSYDLERIKHNYTNILMH 569
           +H+    V  D E  K NY N LMH
Sbjct: 536 MHEYGVGVPVDFEMAKKNYDNALMH 560


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,641,572
Number of Sequences: 5004
Number of extensions: 52884
Number of successful extensions: 118
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)