Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30949
(656 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_07_0300 - 29081563-29081712,29082183-29082266,29082354-290823... 30 1.9
03_02_0031 + 5134889-5135021,5135109-5135179,5135267-5135428,513... 29 2.5
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 2.5
01_05_0344 + 21172101-21172233,21172332-21172402,21172492-211726... 29 2.5
09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784 29 3.3
04_03_0594 - 17733827-17735085,17735576-17735642,17736379-177364... 29 3.3
02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688 29 3.3
09_04_0479 - 17948043-17949037,17949554-17949715,17949809-179502... 29 4.3
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 29 4.3
04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727 29 4.3
12_01_0950 - 9463148-9464358,9465326-9465644 28 5.7
06_03_1325 - 29334401-29334859,29335163-29335857,29336538-293367... 28 5.7
06_03_1317 - 29275262-29276424,29278476-29279352 28 5.7
02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263 28 5.7
02_01_0088 - 627825-628984,629339-629509,629612-630416 28 7.5
01_03_0303 + 14792842-14792949,14793659-14793760,14794657-147948... 28 7.5
08_02_0420 - 16911814-16912851 27 9.9
04_03_0185 + 12419956-12420001,12420133-12421373 27 9.9
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 27 9.9
01_03_0307 + 14879564-14879594,14880024-14880182,14880629-14881857 27 9.9
>05_07_0300 -
29081563-29081712,29082183-29082266,29082354-29082394,
29082486-29082580,29082655-29082750,29082821-29082909,
29082988-29083284,29083631-29083657
Length = 292
Score = 29.9 bits (64), Expect = 1.9
Identities = 19/50 (38%), Positives = 30/50 (60%)
Frame = +3
Query: 183 DLIQQLNKNKRKLALRENSLDELRIVTGLPLITSRSGNGLHQAIRSSDVI 332
D+I +L KN+R+ A++ LR++T +P I + N L QAI S + I
Sbjct: 207 DIISRL-KNEREQAVQCTD-SFLRVLTSIPGIDNHDANALAQAIGSIEAI 254
>03_02_0031 +
5134889-5135021,5135109-5135179,5135267-5135428,
5135786-5135891,5136385-5136429,5136850-5136946,
5137027-5137210,5137304-5137483,5137567-5137770
Length = 393
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 138 SCENGYLKI*PKFSVDLIQQLNKNKRKLALRENSLDELRIVTGLPLITSRSGNGLHQAIR 317
S E G LK + + LIQ + K++LA +E + E + L+T GN +H+++
Sbjct: 60 SKEIGKLKAKKEDASALIQSTEEIKKRLAAKETEVQEAKGTLDAKLVT--IGNIVHESVP 117
Query: 318 SSD 326
SD
Sbjct: 118 VSD 120
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 29.5 bits (63), Expect = 2.5
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 3/34 (8%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVPP---KDIINGLL 33
LS +N++ I+ ++ CCL ++VP K I NG L
Sbjct: 456 LSQINHRNIVKLYGCCLEVEVPMLVYKYIPNGTL 489
>01_05_0344 +
21172101-21172233,21172332-21172402,21172492-21172653,
21172995-21173100,21174242-21174439,21174565-21174631,
21174868-21175051,21175145-21175324,21175408-21175587,
21176472-21176627,21177487-21178067,21178535-21178640,
21179152-21179331,21179620-21179892
Length = 858
Score = 29.5 bits (63), Expect = 2.5
Identities = 20/63 (31%), Positives = 33/63 (52%)
Frame = +3
Query: 138 SCENGYLKI*PKFSVDLIQQLNKNKRKLALRENSLDELRIVTGLPLITSRSGNGLHQAIR 317
S E G LK + + LIQ + K++LA +E + E + L+T GN +H+++
Sbjct: 60 SKEIGKLKAKKEDASALIQSTEEIKKRLAAKETEVQEAKGTLDAKLVT--IGNIVHESVP 117
Query: 318 SSD 326
SD
Sbjct: 118 VSD 120
>09_04_0473 - 17906802-17907964,17908175-17908871,17910323-17910784
Length = 773
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS VN+K I+ + CCL ++VP
Sbjct: 499 LSQVNHKNIVKLLGCCLEVEVP 520
>04_03_0594 -
17733827-17735085,17735576-17735642,17736379-17736413,
17736810-17737665
Length = 738
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/33 (33%), Positives = 21/33 (63%)
Frame = -1
Query: 158 KIAVFTAWPMSLSDVNYKYIIAIWPCCLVIKVP 60
+I +F LS +N+++I+ ++ CCL +VP
Sbjct: 437 EITLFINEVAILSQINHRHIVKLFGCCLETEVP 469
>02_05_1159 + 34563779-34564715,34567232-34567399,34567508-34568688
Length = 761
Score = 29.1 bits (62), Expect = 3.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K II + CCL ++VP
Sbjct: 485 LSQINHKNIIKLLGCCLEVEVP 506
>09_04_0479 -
17948043-17949037,17949554-17949715,17949809-17950262,
17952895-17953326
Length = 680
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K I+ + CCL ++VP
Sbjct: 406 LSQINHKNIVKLLGCCLEVEVP 427
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 28.7 bits (61), Expect = 4.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K I+ + CCL ++VP
Sbjct: 257 LSQINHKNIVKLLGCCLEVEVP 278
>04_04_0518 - 25858336-25859537,25859919-25860749,25861640-25861727
Length = 706
Score = 28.7 bits (61), Expect = 4.3
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K II + CCL ++VP
Sbjct: 422 LSPINHKNIIKLLGCCLEVEVP 443
>12_01_0950 - 9463148-9464358,9465326-9465644
Length = 509
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N++ ++ ++ CCL KVP
Sbjct: 231 LSQINHRNVVKLFGCCLETKVP 252
>06_03_1325 -
29334401-29334859,29335163-29335857,29336538-29336750,
29338791-29339472,29339781-29340020
Length = 762
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS VN+K I+ + CCL + VP
Sbjct: 497 LSQVNHKNIVKLLGCCLEVDVP 518
>06_03_1317 - 29275262-29276424,29278476-29279352
Length = 679
Score = 28.3 bits (60), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS VN+K I+ + CCL + VP
Sbjct: 411 LSQVNHKNIVKLLGCCLEVDVP 432
>02_05_1153 - 34501778-34502961,34503052-34503219,34503306-34504263
Length = 769
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K ++ + CCL ++VP
Sbjct: 496 LSQINHKNVVKLLGCCLEVEVP 517
>02_01_0088 - 627825-628984,629339-629509,629612-630416
Length = 711
Score = 27.9 bits (59), Expect = 7.5
Identities = 13/42 (30%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVPP---KDIINGLLVTDFNASY 9
LS +N++ ++ + CCL ++VP + I NG L + Y
Sbjct: 441 LSQINHRNVVRLLGCCLEVEVPMLVYEFIPNGTLFEHIHGKY 482
>01_03_0303 + 14792842-14792949,14793659-14793760,14794657-14794800,
14794906-14794986,14795078-14795147,14795267-14795337,
14795427-14795594,14796030-14796074,14796449-14796511,
14796594-14796869,14797858-14797971,14798099-14798225,
14798315-14798484,14798743-14798841,14799577-14799630,
14801487-14801522,14801741-14801844,14801952-14802186,
14802377-14802609,14802846-14803346,14803422-14803716,
14805796-14805881,14806952-14807064,14807303-14807385,
14808014-14808866,14809215-14809364,14809963-14811146
Length = 1854
Score = 27.9 bits (59), Expect = 7.5
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K I+ + CCL + VP
Sbjct: 1576 LSQINHKNIVKLLGCCLEVDVP 1597
>08_02_0420 - 16911814-16912851
Length = 345
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = -1
Query: 146 FTAWPMSLSDVNYKYIIAIWPCCLVIKVP 60
F+ + LS +N++ ++ + CCL ++VP
Sbjct: 92 FSREMLILSQINHRNVVKLLGCCLEVQVP 120
>04_03_0185 + 12419956-12420001,12420133-12421373
Length = 428
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 7/46 (15%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP-------PKDIINGLLVTDFNASY 9
LS +N++ I+ ++ CCL +VP P + G+L D +S+
Sbjct: 139 LSQINHRNIVRLFGCCLETEVPLLVYDFIPNGSLFGILHADARSSF 184
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N++ I+ + CCL ++VP
Sbjct: 471 LSQINHRNIVKLHGCCLEVEVP 492
>01_03_0307 + 14879564-14879594,14880024-14880182,14880629-14881857
Length = 472
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = -1
Query: 125 LSDVNYKYIIAIWPCCLVIKVP 60
LS +N+K I+ + CCL + +P
Sbjct: 179 LSQINHKNIVKLLGCCLEVDIP 200
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,815,520
Number of Sequences: 37544
Number of extensions: 296394
Number of successful extensions: 631
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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