Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30949
         (656 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK128636-1|BAC87543.1| 1042|Homo sapiens protein ( Homo sapiens ...    30   6.3  
AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens ...    30   6.3  

>AK128636-1|BAC87543.1| 1042|Homo sapiens protein ( Homo sapiens
           cDNA FLJ46795 fis, clone TRACH3030176, weakly  similar
           to CDC4-like protein. ).
          Length = 1042

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 54  FGGHFYHQTTWPNCYDVFIVNIAQGHWPSCENGYLKI*PKFSVDLIQQLNKNKRKLALRE 233
           + GH      W +CY+  +VN+   H    E G  K+  KF    ++  N+  R+  LR 
Sbjct: 51  YDGHENMALYWKDCYEALMVNM---HKRDREGGESKL--KFQELFVEPFNRKARQENLRY 105

Query: 234 NSL 242
           N++
Sbjct: 106 NNM 108


>AK127772-1|BAC87125.1| 1314|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45873 fis, clone OCBBF3006986, weakly  similar
           to CDC4-like protein. ).
          Length = 1314

 Score = 30.3 bits (65), Expect = 6.3
 Identities = 18/63 (28%), Positives = 30/63 (47%)
 Frame = +3

Query: 54  FGGHFYHQTTWPNCYDVFIVNIAQGHWPSCENGYLKI*PKFSVDLIQQLNKNKRKLALRE 233
           + GH      W +CY+  +VN+   H    E G  K+  KF    ++  N+  R+  LR 
Sbjct: 413 YDGHENMALYWKDCYEALMVNM---HKRDREGGESKL--KFQELFVEPFNRKARQENLRY 467

Query: 234 NSL 242
           N++
Sbjct: 468 NNM 470


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,091,452
Number of Sequences: 237096
Number of extensions: 1641261
Number of successful extensions: 2306
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2306
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7366354010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)