Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30945
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe...    27   3.5  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.5  
SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ...    26   4.6  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   6.1  

>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 959

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/40 (25%), Positives = 21/40 (52%)
 Frame = -3

Query: 439 FANKLYWKLNNILNTYIIVSSLENIPVYICIYTKPTNHSS 320
           F++  +  +N +L T  +  S E + +++C+   P N  S
Sbjct: 165 FSSNAFLAVNKLLQTPAVSKSTEGVGLFLCLTRVPDNVKS 204


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = +2

Query: 17  WDFTRLRDSNTVASLYTN-TPDILSF 91
           WDF  L  SN+V S +TN  PDI SF
Sbjct: 243 WDFNML-CSNSVQSAHTNLQPDITSF 267


>SPBC947.15c |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 551

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 11/33 (33%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 548 ASVEARIAATQGLVFDAFFRIL---DGYVIGEC 459
           +S+  +  A +GL+ D FFR+    + Y +G+C
Sbjct: 378 SSIPEQSGARKGLIVDEFFRVKGVPEMYAVGDC 410


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 469 SVNAILFKFHFANKLYWKLNNILNTYIIVSSLENIPV 359
           +V+  LFKF F  +LY   NN+      +  L+N+ +
Sbjct: 172 NVSTDLFKFSFLTELYINHNNLTRLPPEIGKLKNLVI 208


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,907,551
Number of Sequences: 5004
Number of extensions: 58876
Number of successful extensions: 123
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)