Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30945
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0820 - 28342925-28343092,28343194-28343232,28343664-283437...    29   3.6  
03_01_0279 - 2141327-2141437,2141667-2141789,2141869-2142057,214...    28   8.4  

>04_04_0820 -
           28342925-28343092,28343194-28343232,28343664-28343729,
           28343847-28343918,28344008-28344127,28344207-28344752
          Length = 336

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -3

Query: 694 SFKGHIHTSSRRIFSADRDSDPVVDSAKHCSCSGRY*QSLKLSPV 560
           SF GH   ++  + S D     +   A+ CS SG      KLS V
Sbjct: 157 SFSGHRSATAEELMSTDTREQEITRLARSCSSSGSDRNKKKLSEV 201


>03_01_0279 -
           2141327-2141437,2141667-2141789,2141869-2142057,
           2142270-2142989,2144857-2144931
          Length = 405

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +3

Query: 492 EECIEYQALSGGYSGFNGCVGGLTGLSLRDC*YLPEQEQCFAESTTGS 635
           +EC    AL+GGY G +G +   TG+ + +C     Q   F  ++T +
Sbjct: 176 DECFT-AALAGGYMGLDGTLYDQTGVMIPNCNVETPQVGFFNHNSTSN 222


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,033,293
Number of Sequences: 37544
Number of extensions: 348334
Number of successful extensions: 626
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 608
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)