Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= maV30942
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|...    28   1.7  
SPBC19G7.10c |||topoisomerase associated protein |Schizosaccharo...    28   1.7  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    28   1.7  
SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr...    27   2.2  
SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces pom...    27   2.2  
SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces pombe...    27   3.8  
SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase |Schizosacchar...    26   5.1  

>SPAC1783.02c |vps66||acyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
 Frame = +1

Query: 328 RATESSW-RGNVERPPDLRSIGSRIRADTKTETKCNRNCANAVCETKQVNLMNVL*ASCY 504
           ++T  S+ +G+  +P D+ ++      D      C  NC  AVC++K  N ++++ A  Y
Sbjct: 121 KSTSGSFVQGDSLQPGDILAVNHSSPLDVLV-LSCLYNCTFAVCDSKTSN-VSIISAQAY 178

Query: 505 F 507
           F
Sbjct: 179 F 179


>SPBC19G7.10c |||topoisomerase associated protein
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 744

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 10/30 (33%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +3

Query: 90  ETHEDLSENVINTGDDINSK-FGIETSTVG 176
           ET++DL   +   GD++N + FG+   ++G
Sbjct: 31  ETYDDLGNQLNEAGDELNDETFGVSAGSIG 60


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 8/67 (11%)
 Frame = +3

Query: 9   EVEDFDVEPEVNEIPTIPETTELPQKVE-------THEDLSENV-INTGDDINSKFGIET 164
           EV DF ++ E    P + + TE+ +KVE       +  ++ ENV ++   + N K     
Sbjct: 310 EVIDFQIQDEETTKPPLEQVTEILEKVEQCKQFYISSREMEENVPLSASKEFNYKLNALI 369

Query: 165 STVGVLE 185
           S   V+E
Sbjct: 370 SWSNVME 376


>SPAC144.16 |||DUF59 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 179

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  NEIPTIPETTELPQKVETHEDL 107
           NE P + E  +LP +VE  EDL
Sbjct: 7   NENPEVKELNQLPSRVEEEEDL 28


>SPBC14F5.03c |kap123||karyopherin Kap123|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1067

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/52 (25%), Positives = 27/52 (51%)
 Frame = +3

Query: 6   LEVEDFDVEPEVNEIPTIPETTELPQKVETHEDLSENVINTGDDINSKFGIE 161
           ++ ++ D+  E    PT  E ++L   VET+E+ ++  +     +NS   +E
Sbjct: 604 IDQDESDILSERIGAPTAEEISQLLDSVETNEEENDEELEKAMGVNSAIAME 655


>SPAC1952.06c |||DUF1716 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 187 ISKTPTVEVSIPNFELMSS-PVFITFSLKSSCVSTF 83
           I     +++ I +F ++S  P+ I   LK  CVSTF
Sbjct: 115 IESEADLDLEIRSFNVLSEYPILIPIFLKLDCVSTF 150


>SPAC1952.08c |||pyridoxamine 5'-phosphate oxidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 190

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = +3

Query: 69  TELPQKVETHEDLSENVINTGDDINSKFGIETSTVGVLEIK 191
           T LP+  +  E   E  +NT D  N+K  +E   + +++IK
Sbjct: 124 TVLPKNSKEEEFFREKHLNTNDKGNTKQYVEGEDMRIIKIK 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,684,123
Number of Sequences: 5004
Number of extensions: 49218
Number of successful extensions: 147
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)