Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30939
(714 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 67 3e-12
SPAC227.04 |||autophagy C terminal domain family protein|Schizos... 29 0.50
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 29 0.66
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 28 1.5
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 2.0
SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit Rev3|Sch... 27 2.7
SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomy... 26 4.7
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc... 26 4.7
SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces pom... 26 6.1
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 26 6.1
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo... 25 8.1
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 25 8.1
SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family |Schizosa... 25 8.1
SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease Pac1|S... 25 8.1
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 25 8.1
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 66.9 bits (156), Expect = 3e-12
Identities = 45/162 (27%), Positives = 74/162 (45%), Gaps = 10/162 (6%)
Frame = +3
Query: 156 RAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYGL---DPEETVDTG--LLYGY 320
+ Q LV AY++ GH A +D + EL YG D T+ G +L +
Sbjct: 127 KVQLLVRAYQSRGHHLAKLDPLGINVNHNRPSELTLEHYGFTESDLNRTIHLGPGILPNF 186
Query: 321 --SGNNS--IKSLVDELVKIYCGHISYEFTHLESEAEREWFAQRIESGVD-PVENDRRIE 485
+G + ++ +V+ KIYCG + EFTH+ S W +E+ +D++I
Sbjct: 187 REAGRKTMTLREIVETCEKIYCGSFAVEFTHISSRKRSNWILSHLETPTPFRYSHDQKIM 246
Query: 486 ILKELLHSQAWDKFLSIKYPTVKRYCGEGLNHY*PSFRLYFD 611
I L + ++++FL K+P KR+ EG P + D
Sbjct: 247 IFDRLSWADSFERFLFTKFPNDKRFGLEGCEAMVPGMKALID 288
Score = 33.5 bits (73), Expect = 0.031
Identities = 12/26 (46%), Positives = 20/26 (76%)
Frame = +2
Query: 623 ERIEQVILGMAHRGKLNVLSGLLQCP 700
E I +++GMAHRG+LN+L +++ P
Sbjct: 293 EGISNIVIGMAHRGRLNLLHNIVRKP 318
>SPAC227.04 |||autophagy C terminal domain family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 29.5 bits (63), Expect = 0.50
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Frame = -3
Query: 193 PYVR*ASTSCCARQFLYLFDIMSSGISYSSAIVGRCPKTPAPEWY----RTRSY 44
PY + Q L + S ++Y + +G CP T WY RTR Y
Sbjct: 84 PYANGSDPLTKMEQIFELLEGSSQNLAYDALAIGDCPGTVGIAWYIHPCRTRDY 137
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 29.1 bits (62), Expect = 0.66
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -1
Query: 165 VALGSSYISLILCPLESRIHLQSSVDARRLPRP 67
+ G+S + LC L + H +S+DA LP P
Sbjct: 179 IGFGASLLDKYLCDLRTSYHKHNSLDALPLPTP 211
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 27.9 bits (59), Expect = 1.5
Identities = 13/39 (33%), Positives = 24/39 (61%)
Frame = +3
Query: 231 NESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSL 347
+ESR E H R+G+ ++ ++ GYS +++IKS+
Sbjct: 138 DESRLRAEQHKRRFGVHSQQPSNSIQTIGYSNSDAIKSI 176
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.5 bits (58), Expect = 2.0
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +3
Query: 531 SIKYPTVKRYCGEGLNHY*PSFRLYFD 611
++K+P + +YCGE LN LY +
Sbjct: 57 NLKHPNIVQYCGEELNRSAQVINLYME 83
>SPAC688.10 |rev3||DNA polymerase zeta catalytic subunit
Rev3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1480
Score = 27.1 bits (57), Expect = 2.7
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 201 KATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVK 365
+A+ N+ +E+ + +LH S++GL E + + + ++K L+ L+K
Sbjct: 246 EASRRNLTSSDETNSFSKLHQSQFGLKEESSHEPRSSQHWKNEVAMKDLLKNLIK 300
>SPAC22A12.16 |||ATP-citrate synthase subunit 2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 26.2 bits (55), Expect = 4.7
Identities = 9/23 (39%), Positives = 18/23 (78%)
Frame = +3
Query: 339 KSLVDELVKIYCGHISYEFTHLE 407
+SLVD ++++Y ++ +FT+LE
Sbjct: 209 ESLVDFIIRLYSVYVDCQFTYLE 231
>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1284
Score = 26.2 bits (55), Expect = 4.7
Identities = 13/27 (48%), Positives = 17/27 (62%)
Frame = -1
Query: 405 PNA*THTIYARNIF*PVHRLSF*LSCC 325
PNA ++IYARN+F V +L L C
Sbjct: 658 PNAGLNSIYARNLFNTVEQLQSVLPNC 684
>SPAC4H3.08 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 6.1
Identities = 16/74 (21%), Positives = 36/74 (48%), Gaps = 12/74 (16%)
Frame = +3
Query: 93 PTIADEYEIPEDIISKRYKNC-----------RAQQLVD-AYRTYGHLKATIDNVDYRNE 236
P D+ E+ D+I + +NC + LVD A + G + ++N+ Y+
Sbjct: 75 PEERDDAEVTRDLIEREGRNCWIWEGKLDKSDNCRDLVDFALKKLGWIDVLVNNIAYQQV 134
Query: 237 SRNIKELHYSRYGL 278
+++I+++ ++ L
Sbjct: 135 AQSIEDIDDEQWDL 148
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 25.8 bits (54), Expect = 6.1
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Frame = +3
Query: 102 ADEYEIPEDIISKRYK--NCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIKELHYSRYG 275
A++ E I ++Y+ R +L DA R LKA ++ + RN+ +L Y YG
Sbjct: 452 AEQVEEETRPIREKYELEKSRGSELQDAKRRLDELKAKAEDAERRNDFTLAADLKY--YG 509
Query: 276 L 278
+
Sbjct: 510 I 510
>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
Vps1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 8.1
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 483 EILKELLHSQAWDKFLSIKYPTVKR 557
E+L++L SQA+DK L TV+R
Sbjct: 633 ELLEQLYKSQAFDKLLQESEVTVQR 657
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 8.1
Identities = 9/17 (52%), Positives = 14/17 (82%)
Frame = +3
Query: 315 GYSGNNSIKSLVDELVK 365
G+S NNS++SLV E+ +
Sbjct: 428 GFSANNSVQSLVSEIFR 444
>SPAC1B3.09c |||Noc2p-Noc3p complex subunit Noc2 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 528
Score = 25.4 bits (53), Expect = 8.1
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = +3
Query: 198 LKATIDNVDYRNESRNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKI 368
LK T+DNVD+ S+ +++L L+ E + T + G ++ S +D ++ I
Sbjct: 135 LKETLDNVDFDARSKILQDLR-----LEYAEILLTKFNFEKKGYQNLSSALDTILHI 186
>SPBC119.11c |pac1|hcs|double-strand-specific ribonuclease
Pac1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 25.4 bits (53), Expect = 8.1
Identities = 13/34 (38%), Positives = 22/34 (64%)
Frame = +1
Query: 394 SRIWSQKQKENGSLSASKAV*ILWKTIEESKFSK 495
+R W QK+ GS +A +A+ +L K + SKF++
Sbjct: 332 ARAWGANQKDAGSRAAMQALEVLAK--DYSKFAR 363
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 25.4 bits (53), Expect = 8.1
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 150 NCRAQQLVDAYRTYGHLKATIDNVDYRNESRNIK 251
NCR +V + H + T + + Y N ++NIK
Sbjct: 358 NCRTVMIVCVSPSSVHYEETHNTLKYANRAKNIK 391
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,940,283
Number of Sequences: 5004
Number of extensions: 60129
Number of successful extensions: 220
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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