Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= maV30939
(714 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical pr... 97 8e-21
Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical p... 97 8e-21
AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical ... 61 9e-10
Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical pr... 28 5.8
Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical p... 28 5.8
Z49068-11|CAN86909.1| 151|Caenorhabditis elegans Hypothetical p... 28 5.8
Z49068-10|CAA88858.1| 296|Caenorhabditis elegans Hypothetical p... 28 5.8
AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator comp... 28 5.8
Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical pr... 28 7.6
>Z78201-4|CAB01590.2| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 97.5 bits (232), Expect = 8e-21
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 1/191 (0%)
Frame = +3
Query: 60 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNES 239
Y G GVFGH P + E+ +N + L++A+R YG+L+A +D + R +
Sbjct: 24 YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80
Query: 240 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 419
++ EL + YGL +E V GN S+ L ++L IYCG + EF H+ + E
Sbjct: 81 ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132
Query: 420 REWFAQRIESGV-DPVENDRRIEILKELLHSQAWDKFLSIKYPTVKRYCGEGLNHY*PSF 596
R+W +Q E+ + + + + + I +L + +DKFLS K+PT+KRY EG F
Sbjct: 133 RQWISQNFENCIAEELRKEELLRIGDLMLKCENFDKFLSTKFPTLKRYGAEGAESMFAFF 192
Query: 597 RLYFDLQHQKE 629
F+ +K+
Sbjct: 193 SELFEGAAEKQ 203
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 25/28 (89%)
Frame = +2
Query: 623 ERIEQVILGMAHRGKLNVLSGLLQCPPV 706
+++E++I+G+AHRG+LN+L+ L+ PPV
Sbjct: 202 KQVEEIIIGIAHRGRLNLLTQLMDFPPV 229
>Z78019-10|CAE46691.1| 911|Caenorhabditis elegans Hypothetical
protein ZK836.2 protein.
Length = 911
Score = 97.5 bits (232), Expect = 8e-21
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 1/191 (0%)
Frame = +3
Query: 60 YHSGAGVFGHRPTIADEYEIPEDIISKRYKNCRAQQLVDAYRTYGHLKATIDNVDYRNES 239
Y G GVFGH P + E+ +N + L++A+R YG+L+A +D + R +
Sbjct: 24 YRPGHGVFGHLPD--PPKRVFENQGGLTPENAQRVHLINAFRRYGYLEADLDPLGLR-KV 80
Query: 240 RNIKELHYSRYGLDPEETVDTGLLYGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAE 419
++ EL + YGL +E V GN S+ L ++L IYCG + EF H+ + E
Sbjct: 81 ESVAELDPAIYGLSLDENV--------KGNFSLHDLAEQLRHIYCGPTAIEFMHINNWEE 132
Query: 420 REWFAQRIESGV-DPVENDRRIEILKELLHSQAWDKFLSIKYPTVKRYCGEGLNHY*PSF 596
R+W +Q E+ + + + + + I +L + +DKFLS K+PT+KRY EG F
Sbjct: 133 RQWISQNFENCIAEELRKEELLRIGDLMLKCENFDKFLSTKFPTLKRYGAEGAESMFAFF 192
Query: 597 RLYFDLQHQKE 629
F+ +K+
Sbjct: 193 SELFEGAAEKQ 203
Score = 39.9 bits (89), Expect = 0.002
Identities = 14/28 (50%), Positives = 25/28 (89%)
Frame = +2
Query: 623 ERIEQVILGMAHRGKLNVLSGLLQCPPV 706
+++E++I+G+AHRG+LN+L+ L+ PPV
Sbjct: 202 KQVEEIIIGIAHRGRLNLLTQLMDFPPV 229
>AF039040-6|AAB94185.2| 1029|Caenorhabditis elegans Hypothetical
protein T22B11.5 protein.
Length = 1029
Score = 60.9 bits (141), Expect = 9e-10
Identities = 41/161 (25%), Positives = 78/161 (48%), Gaps = 9/161 (5%)
Frame = +3
Query: 156 RAQQLVDAYRTYGHLKATIDNVDYRNESRNIK---ELHYSRYGL-----DPEETVDTGLL 311
+ Q L+ +Y+T GH A +D + + + EL S YGL D E +
Sbjct: 140 KIQLLIRSYQTRGHNIADLDPLGINSADLDDTIPPELELSFYGLGERDLDREFLLPPTTF 199
Query: 312 YGYSGNNSIKSLVDELVKIYCGHISYEFTHLESEAEREWFAQRIESG-VDPVENDRRIEI 488
+ +++ ++ L IYC E+ HL + +++W +R E+ V + +D++ +
Sbjct: 200 ISEKKSLTLREILQRLKDIYCTSTGVEYMHLNNLEQQDWIRRRFEAPRVTELSHDQKKVL 259
Query: 489 LKELLHSQAWDKFLSIKYPTVKRYCGEGLNHY*PSFRLYFD 611
K L+ S +++FL+ K+P+ KR+ EG P+ + D
Sbjct: 260 FKRLIRSTKFEEFLAKKWPSEKRFGLEGCEVLIPAMKQVID 300
Score = 29.9 bits (64), Expect = 1.9
Identities = 10/24 (41%), Positives = 18/24 (75%)
Frame = +2
Query: 629 IEQVILGMAHRGKLNVLSGLLQCP 700
++ ++GM HRG+LNVL+ + + P
Sbjct: 307 VDSFVIGMPHRGRLNVLANVCRQP 330
>Z68314-9|CAA92667.2| 2862|Caenorhabditis elegans Hypothetical protein
K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +3
Query: 366 IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 545
I+ + + +ES E+E ++ E P+E+ + E+L+ +L S +L++
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835
Query: 546 TVKRY 560
T RY
Sbjct: 2836 TGDRY 2840
>Z66497-12|CAA91289.2| 2862|Caenorhabditis elegans Hypothetical
protein K08F8.6 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +3
Query: 366 IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 545
I+ + + +ES E+E ++ E P+E+ + E+L+ +L S +L++
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835
Query: 546 TVKRY 560
T RY
Sbjct: 2836 TGDRY 2840
>Z49068-11|CAN86909.1| 151|Caenorhabditis elegans Hypothetical
protein K01C8.7b protein.
Length = 151
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 508 EWSNSLRISILRSFSTGSTPLSMR*ANHSLSASDSKCVNS 389
+W NSLR I +FSTGS L+ + +S S C+ +
Sbjct: 87 QWYNSLRTKIYENFSTGS-KLANNLISGCISGSAIMCITN 125
>Z49068-10|CAA88858.1| 296|Caenorhabditis elegans Hypothetical
protein K01C8.7a protein.
Length = 296
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = -3
Query: 508 EWSNSLRISILRSFSTGSTPLSMR*ANHSLSASDSKCVNS 389
+W NSLR I +FSTGS L+ + +S S C+ +
Sbjct: 87 QWYNSLRTKIYENFSTGS-KLANNLISGCISGSAIMCITN 125
>AB223006-1|BAE16563.1| 2862|Caenorhabditis elegans Mediator complex
subunit Med13 protein.
Length = 2862
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/65 (24%), Positives = 32/65 (49%)
Frame = +3
Query: 366 IYCGHISYEFTHLESEAEREWFAQRIESGVDPVENDRRIEILKELLHSQAWDKFLSIKYP 545
I+ + + +ES E+E ++ E P+E+ + E+L+ +L S +L++
Sbjct: 2776 IHISEVKNDDIAMESTKEKEKDKEKDEKDAHPLESRQTEEVLRHVLESYNALSWLNLNRQ 2835
Query: 546 TVKRY 560
T RY
Sbjct: 2836 TGDRY 2840
>Z81508-1|CAB04142.1| 331|Caenorhabditis elegans Hypothetical
protein F20E11.1 protein.
Length = 331
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 1/44 (2%)
Frame = -2
Query: 233 ISVVYVIYSSF*MS-VRTVSVDQLLRSAVLISL*YYVLWNLVFI 105
+ V Y+++ S + + VSV+ L + VLI+L ++ L+N+++I
Sbjct: 71 VKVSYLVFVSACFNFILAVSVNSLQTNRVLIALLFFALFNVLYI 114
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,080,606
Number of Sequences: 27780
Number of extensions: 327147
Number of successful extensions: 953
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 946
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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